Protein–RNA interactions for Protein: Q99986

VRK1, Serine/threonine-protein kinase VRK1, humanhuman

Predicted RBP Predictions only

Length 396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1Q99986 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
VRK1Q99986 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
VRK1Q99986 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
VRK1Q99986 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VRK1Q99986 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VRK1Q99986 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VRK1Q99986 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC15.24■□□□□ 0.03
VRK1Q99986 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
VRK1Q99986 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VRK1Q99986 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC15.24■□□□□ 0.03
VRK1Q99986 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC15.24■□□□□ 0.03
VRK1Q99986 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VRK1Q99986 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
VRK1Q99986 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VRK1Q99986 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
VRK1Q99986 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VRK1Q99986 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
VRK1Q99986 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
VRK1Q99986 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VRK1Q99986 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC15.24■□□□□ 0.03
VRK1Q99986 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VRK1Q99986 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
VRK1Q99986 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC15.24■□□□□ 0.03
VRK1Q99986 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VRK1Q99986 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
VRK1Q99986 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC15.24■□□□□ 0.03
VRK1Q99986 AL662844.1-201ENST00000546340 181 ntBASIC15.24■□□□□ 0.03
VRK1Q99986 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC15.24■□□□□ 0.03
VRK1Q99986 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC15.24■□□□□ 0.03
VRK1Q99986 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
VRK1Q99986 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC15.24■□□□□ 0.03
VRK1Q99986 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC15.24■□□□□ 0.03
VRK1Q99986 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC15.24■□□□□ 0.03
VRK1Q99986 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VRK1Q99986 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC15.24■□□□□ 0.03
VRK1Q99986 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
VRK1Q99986 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
VRK1Q99986 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VRK1Q99986 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VRK1Q99986 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VRK1Q99986 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
VRK1Q99986 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VRK1Q99986 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
VRK1Q99986 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VRK1Q99986 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
VRK1Q99986 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VRK1Q99986 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
VRK1Q99986 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
VRK1Q99986 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VRK1Q99986 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC15.23■□□□□ 0.03
VRK1Q99986 HLA-DQB1-201ENST00000374943 1656 ntBASIC15.23■□□□□ 0.03
VRK1Q99986 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC15.23■□□□□ 0.03
VRK1Q99986 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VRK1Q99986 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
VRK1Q99986 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
VRK1Q99986 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VRK1Q99986 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VRK1Q99986 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
VRK1Q99986 EMD-201ENST00000369835 966 ntTSL 3 BASIC15.23■□□□□ 0.03
VRK1Q99986 DANCR-204ENST00000444958 709 ntTSL 3 BASIC15.23■□□□□ 0.03
VRK1Q99986 MEG3-211ENST00000452514 461 ntTSL 3 BASIC15.23■□□□□ 0.03
VRK1Q99986 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC15.23■□□□□ 0.03
VRK1Q99986 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC15.23■□□□□ 0.03
VRK1Q99986 AC064862.7-201ENST00000604520 867 ntBASIC15.23■□□□□ 0.03
VRK1Q99986 AC008608.2-201ENST00000606089 416 ntBASIC15.23■□□□□ 0.03
VRK1Q99986 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
VRK1Q99986 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
VRK1Q99986 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
VRK1Q99986 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC15.23■□□□□ 0.03
VRK1Q99986 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VRK1Q99986 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VRK1Q99986 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
VRK1Q99986 AC068418.2-201ENST00000577309 3703 ntBASIC15.23■□□□□ 0.03
VRK1Q99986 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
VRK1Q99986 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
VRK1Q99986 PCDH8P1-201ENST00000428983 2773 ntBASIC15.23■□□□□ 0.03
VRK1Q99986 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VRK1Q99986 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VRK1Q99986 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
VRK1Q99986 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
VRK1Q99986 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VRK1Q99986 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
VRK1Q99986 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VRK1Q99986 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
VRK1Q99986 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
VRK1Q99986 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC15.22■□□□□ 0.03
VRK1Q99986 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC15.22■□□□□ 0.03
VRK1Q99986 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VRK1Q99986 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VRK1Q99986 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC15.22■□□□□ 0.03
VRK1Q99986 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
VRK1Q99986 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC15.22■□□□□ 0.03
VRK1Q99986 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC15.22■□□□□ 0.03
VRK1Q99986 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC15.22■□□□□ 0.03
VRK1Q99986 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC15.22■□□□□ 0.03
VRK1Q99986 FAM197Y8-203ENST00000450145 560 ntBASIC15.22■□□□□ 0.03
VRK1Q99986 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC15.22■□□□□ 0.03
VRK1Q99986 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC15.22■□□□□ 0.03
VRK1Q99986 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC15.22■□□□□ 0.03
VRK1Q99986 MOK-208ENST00000519058 917 ntTSL 2 BASIC15.22■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms