Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VMP1Q96GC9 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VMP1Q96GC9 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC16.53■□□□□ 0.24
VMP1Q96GC9 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VMP1Q96GC9 INTS4P1-201ENST00000438455 1935 ntBASIC16.53■□□□□ 0.24
VMP1Q96GC9 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC16.53■□□□□ 0.24
VMP1Q96GC9 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC16.52■□□□□ 0.24
VMP1Q96GC9 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
VMP1Q96GC9 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
VMP1Q96GC9 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC16.52■□□□□ 0.24
VMP1Q96GC9 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC16.52■□□□□ 0.24
VMP1Q96GC9 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.24
VMP1Q96GC9 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
VMP1Q96GC9 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
VMP1Q96GC9 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
VMP1Q96GC9 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
VMP1Q96GC9 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.24
VMP1Q96GC9 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
VMP1Q96GC9 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC16.52■□□□□ 0.24
VMP1Q96GC9 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
VMP1Q96GC9 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
VMP1Q96GC9 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
VMP1Q96GC9 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
VMP1Q96GC9 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC16.52■□□□□ 0.24
VMP1Q96GC9 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC16.52■□□□□ 0.24
VMP1Q96GC9 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
VMP1Q96GC9 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
VMP1Q96GC9 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
VMP1Q96GC9 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
VMP1Q96GC9 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC16.52■□□□□ 0.24
VMP1Q96GC9 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
VMP1Q96GC9 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC16.52■□□□□ 0.23
VMP1Q96GC9 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
VMP1Q96GC9 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
VMP1Q96GC9 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
VMP1Q96GC9 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC16.52■□□□□ 0.23
VMP1Q96GC9 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
VMP1Q96GC9 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC16.52■□□□□ 0.23
VMP1Q96GC9 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC16.52■□□□□ 0.23
VMP1Q96GC9 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
VMP1Q96GC9 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VMP1Q96GC9 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC16.51■□□□□ 0.23
VMP1Q96GC9 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VMP1Q96GC9 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
VMP1Q96GC9 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC16.51■□□□□ 0.23
VMP1Q96GC9 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC16.51■□□□□ 0.23
VMP1Q96GC9 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC16.51■□□□□ 0.23
VMP1Q96GC9 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VMP1Q96GC9 KRT18P55-202ENST00000578578 1546 ntBASIC16.51■□□□□ 0.23
VMP1Q96GC9 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
VMP1Q96GC9 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
VMP1Q96GC9 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VMP1Q96GC9 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VMP1Q96GC9 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VMP1Q96GC9 HLA-DQB1-201ENST00000374943 1656 ntBASIC16.51■□□□□ 0.23
VMP1Q96GC9 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VMP1Q96GC9 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
VMP1Q96GC9 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
VMP1Q96GC9 EMD-201ENST00000369835 966 ntTSL 3 BASIC16.51■□□□□ 0.23
VMP1Q96GC9 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VMP1Q96GC9 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC16.51■□□□□ 0.23
VMP1Q96GC9 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC16.51■□□□□ 0.23
VMP1Q96GC9 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC16.51■□□□□ 0.23
VMP1Q96GC9 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC16.51■□□□□ 0.23
VMP1Q96GC9 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC16.51■□□□□ 0.23
VMP1Q96GC9 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC16.51■□□□□ 0.23
VMP1Q96GC9 GZMM-202ENST00000592501 941 ntTSL 3 BASIC16.51■□□□□ 0.23
VMP1Q96GC9 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VMP1Q96GC9 UBALD1-205ENST00000590891 2641 ntBASIC16.51■□□□□ 0.23
VMP1Q96GC9 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VMP1Q96GC9 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VMP1Q96GC9 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VMP1Q96GC9 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VMP1Q96GC9 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
VMP1Q96GC9 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC16.51■□□□□ 0.23
VMP1Q96GC9 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VMP1Q96GC9 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
VMP1Q96GC9 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VMP1Q96GC9 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC16.51■□□□□ 0.23
VMP1Q96GC9 AC006116.8-202ENST00000587620 1550 ntBASIC16.51■□□□□ 0.23
VMP1Q96GC9 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VMP1Q96GC9 AL596257.1-201ENST00000641463 2694 ntBASIC16.51■□□□□ 0.23
VMP1Q96GC9 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VMP1Q96GC9 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VMP1Q96GC9 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC16.51■□□□□ 0.23
VMP1Q96GC9 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
VMP1Q96GC9 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VMP1Q96GC9 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC16.5■□□□□ 0.23
VMP1Q96GC9 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
VMP1Q96GC9 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC16.5■□□□□ 0.23
VMP1Q96GC9 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
VMP1Q96GC9 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VMP1Q96GC9 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VMP1Q96GC9 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC16.5■□□□□ 0.23
VMP1Q96GC9 AC100803.2-201ENST00000562459 1963 ntBASIC16.5■□□□□ 0.23
VMP1Q96GC9 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VMP1Q96GC9 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
VMP1Q96GC9 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VMP1Q96GC9 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC16.5■□□□□ 0.23
VMP1Q96GC9 CD9-202ENST00000382515 1229 ntTSL 5 BASIC16.5■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms