Protein–RNA interactions for Protein: Q8TER0

SNED1, Sushi, nidogen and EGF-like domain-containing protein 1, humanhuman

Predictions only

Length 1,413 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNED1Q8TER0 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC20.7■□□□□ 0.9
SNED1Q8TER0 AC009477.1-201ENST00000452936 217 ntBASIC20.7■□□□□ 0.9
SNED1Q8TER0 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SNED1Q8TER0 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC20.7■□□□□ 0.9
SNED1Q8TER0 AC009118.2-201ENST00000613275 655 ntBASIC20.7■□□□□ 0.9
SNED1Q8TER0 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
SNED1Q8TER0 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SNED1Q8TER0 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SNED1Q8TER0 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
SNED1Q8TER0 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC20.69■□□□□ 0.9
SNED1Q8TER0 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
SNED1Q8TER0 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SNED1Q8TER0 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
SNED1Q8TER0 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SNED1Q8TER0 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
SNED1Q8TER0 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SNED1Q8TER0 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
SNED1Q8TER0 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
SNED1Q8TER0 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SNED1Q8TER0 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SNED1Q8TER0 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC20.69■□□□□ 0.9
SNED1Q8TER0 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC20.69■□□□□ 0.9
SNED1Q8TER0 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC20.69■□□□□ 0.9
SNED1Q8TER0 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SNED1Q8TER0 PIN1P1-201ENST00000412108 996 ntBASIC20.69■□□□□ 0.9
SNED1Q8TER0 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC20.69■□□□□ 0.9
SNED1Q8TER0 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SNED1Q8TER0 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SNED1Q8TER0 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC20.69■□□□□ 0.9
SNED1Q8TER0 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC20.69■□□□□ 0.9
SNED1Q8TER0 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC20.69■□□□□ 0.9
SNED1Q8TER0 AC022144.1-201ENST00000602255 1580 ntBASIC20.69■□□□□ 0.9
SNED1Q8TER0 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
SNED1Q8TER0 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
SNED1Q8TER0 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
SNED1Q8TER0 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SNED1Q8TER0 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SNED1Q8TER0 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SNED1Q8TER0 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
SNED1Q8TER0 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC20.68■□□□□ 0.9
SNED1Q8TER0 PXK-206ENST00000463280 2825 ntTSL 2 BASIC20.68■□□□□ 0.9
SNED1Q8TER0 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
SNED1Q8TER0 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
SNED1Q8TER0 U91328.1-201ENST00000437528 223 ntBASIC20.68■□□□□ 0.9
SNED1Q8TER0 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC20.68■□□□□ 0.9
SNED1Q8TER0 AL138918.1-201ENST00000568306 659 ntBASIC20.68■□□□□ 0.9
SNED1Q8TER0 AC091167.2-201ENST00000579581 588 ntBASIC20.68■□□□□ 0.9
SNED1Q8TER0 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC20.68■□□□□ 0.9
SNED1Q8TER0 AL358472.5-202ENST00000641448 1267 ntBASIC20.68■□□□□ 0.9
SNED1Q8TER0 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
SNED1Q8TER0 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SNED1Q8TER0 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SNED1Q8TER0 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SNED1Q8TER0 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SNED1Q8TER0 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SNED1Q8TER0 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SNED1Q8TER0 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SNED1Q8TER0 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC20.67■□□□□ 0.9
SNED1Q8TER0 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SNED1Q8TER0 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC20.67■□□□□ 0.9
SNED1Q8TER0 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
SNED1Q8TER0 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC20.67■□□□□ 0.9
SNED1Q8TER0 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SNED1Q8TER0 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
SNED1Q8TER0 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SNED1Q8TER0 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC20.67■□□□□ 0.9
SNED1Q8TER0 HLA-V-201ENST00000429037 534 ntBASIC20.67■□□□□ 0.9
SNED1Q8TER0 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SNED1Q8TER0 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
SNED1Q8TER0 SATB1-217ENST00000493952 626 ntTSL 3 BASIC20.67■□□□□ 0.9
SNED1Q8TER0 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SNED1Q8TER0 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
SNED1Q8TER0 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
SNED1Q8TER0 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SNED1Q8TER0 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
SNED1Q8TER0 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC20.67■□□□□ 0.9
SNED1Q8TER0 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SNED1Q8TER0 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SNED1Q8TER0 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SNED1Q8TER0 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SNED1Q8TER0 NEFHP1-201ENST00000412845 2629 ntBASIC20.66■□□□□ 0.9
SNED1Q8TER0 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SNED1Q8TER0 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SNED1Q8TER0 PODN-203ENST00000395871 2744 ntTSL 5 BASIC20.66■□□□□ 0.9
SNED1Q8TER0 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
SNED1Q8TER0 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC20.66■□□□□ 0.9
SNED1Q8TER0 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SNED1Q8TER0 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SNED1Q8TER0 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SNED1Q8TER0 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SNED1Q8TER0 AC120498.9-201ENST00000339021 3867 ntBASIC20.66■□□□□ 0.9
SNED1Q8TER0 LINC00895-201ENST00000629028 1637 ntBASIC20.66■□□□□ 0.9
SNED1Q8TER0 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SNED1Q8TER0 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
SNED1Q8TER0 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC20.66■□□□□ 0.9
SNED1Q8TER0 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC20.66■□□□□ 0.9
SNED1Q8TER0 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC20.66■□□□□ 0.9
SNED1Q8TER0 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC20.66■□□□□ 0.9
SNED1Q8TER0 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC20.66■□□□□ 0.9
SNED1Q8TER0 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC20.66■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms