Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
LMX1AQ8TE12 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LMX1AQ8TE12 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
LMX1AQ8TE12 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
LMX1AQ8TE12 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
LMX1AQ8TE12 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC16.69■□□□□ 0.26
LMX1AQ8TE12 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
LMX1AQ8TE12 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC16.69■□□□□ 0.26
LMX1AQ8TE12 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
LMX1AQ8TE12 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC16.68■□□□□ 0.26
LMX1AQ8TE12 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC16.68■□□□□ 0.26
LMX1AQ8TE12 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LMX1AQ8TE12 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
LMX1AQ8TE12 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC16.68■□□□□ 0.26
LMX1AQ8TE12 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LMX1AQ8TE12 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LMX1AQ8TE12 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LMX1AQ8TE12 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
LMX1AQ8TE12 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LMX1AQ8TE12 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
LMX1AQ8TE12 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LMX1AQ8TE12 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LMX1AQ8TE12 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC16.68■□□□□ 0.26
LMX1AQ8TE12 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LMX1AQ8TE12 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC16.68■□□□□ 0.26
LMX1AQ8TE12 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
LMX1AQ8TE12 PNMT-202ENST00000394246 821 ntTSL 2 BASIC16.68■□□□□ 0.26
LMX1AQ8TE12 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC16.68■□□□□ 0.26
LMX1AQ8TE12 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LMX1AQ8TE12 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
LMX1AQ8TE12 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC16.68■□□□□ 0.26
LMX1AQ8TE12 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LMX1AQ8TE12 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LMX1AQ8TE12 AC107918.2-201ENST00000530817 355 ntBASIC16.68■□□□□ 0.26
LMX1AQ8TE12 AC004449.1-201ENST00000564240 433 ntBASIC16.68■□□□□ 0.26
LMX1AQ8TE12 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC16.68■□□□□ 0.26
LMX1AQ8TE12 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC16.68■□□□□ 0.26
LMX1AQ8TE12 AC093028.1-201ENST00000622998 982 ntBASIC16.68■□□□□ 0.26
LMX1AQ8TE12 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LMX1AQ8TE12 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC16.68■□□□□ 0.26
LMX1AQ8TE12 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
LMX1AQ8TE12 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LMX1AQ8TE12 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC16.68■□□□□ 0.26
LMX1AQ8TE12 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LMX1AQ8TE12 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LMX1AQ8TE12 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
LMX1AQ8TE12 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LMX1AQ8TE12 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LMX1AQ8TE12 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC16.67■□□□□ 0.26
LMX1AQ8TE12 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC16.67■□□□□ 0.26
LMX1AQ8TE12 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
LMX1AQ8TE12 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
LMX1AQ8TE12 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC16.67■□□□□ 0.26
LMX1AQ8TE12 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
LMX1AQ8TE12 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC16.67■□□□□ 0.26
LMX1AQ8TE12 TIMM8BP1-201ENST00000452384 211 ntBASIC16.67■□□□□ 0.26
LMX1AQ8TE12 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
LMX1AQ8TE12 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC16.67■□□□□ 0.26
LMX1AQ8TE12 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC16.67■□□□□ 0.26
LMX1AQ8TE12 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC16.67■□□□□ 0.26
LMX1AQ8TE12 IGHV3OR16-6-201ENST00000568775 360 ntBASIC16.67■□□□□ 0.26
LMX1AQ8TE12 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC16.67■□□□□ 0.26
LMX1AQ8TE12 AL645728.2-201ENST00000641974 660 ntBASIC16.67■□□□□ 0.26
LMX1AQ8TE12 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LMX1AQ8TE12 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LMX1AQ8TE12 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
LMX1AQ8TE12 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
LMX1AQ8TE12 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LMX1AQ8TE12 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC16.67■□□□□ 0.26
LMX1AQ8TE12 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
LMX1AQ8TE12 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
LMX1AQ8TE12 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
LMX1AQ8TE12 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LMX1AQ8TE12 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC16.67■□□□□ 0.26
LMX1AQ8TE12 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LMX1AQ8TE12 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LMX1AQ8TE12 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.26
LMX1AQ8TE12 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LMX1AQ8TE12 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC16.66■□□□□ 0.26
LMX1AQ8TE12 GOLGA6L17P-202ENST00000614358 1398 ntBASIC16.66■□□□□ 0.26
LMX1AQ8TE12 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LMX1AQ8TE12 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
LMX1AQ8TE12 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LMX1AQ8TE12 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC16.66■□□□□ 0.26
LMX1AQ8TE12 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
LMX1AQ8TE12 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LMX1AQ8TE12 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
LMX1AQ8TE12 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
LMX1AQ8TE12 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC16.66■□□□□ 0.26
LMX1AQ8TE12 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC16.66■□□□□ 0.26
LMX1AQ8TE12 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
LMX1AQ8TE12 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC16.66■□□□□ 0.26
LMX1AQ8TE12 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC16.66■□□□□ 0.26
LMX1AQ8TE12 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC16.66■□□□□ 0.26
LMX1AQ8TE12 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC16.66■□□□□ 0.26
LMX1AQ8TE12 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC16.66■□□□□ 0.26
LMX1AQ8TE12 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC16.66■□□□□ 0.26
LMX1AQ8TE12 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC16.66■□□□□ 0.26
LMX1AQ8TE12 AC022145.2-201ENST00000598203 171 ntBASIC16.66■□□□□ 0.26
LMX1AQ8TE12 BSG-214ENST00000614867 960 ntTSL 3 BASIC16.66■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms