Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC19.09■□□□□ 0.65
CCDC65Q8IXS2 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC65Q8IXS2 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC65Q8IXS2 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC65Q8IXS2 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC19.09■□□□□ 0.65
CCDC65Q8IXS2 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
CCDC65Q8IXS2 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC19.09■□□□□ 0.65
CCDC65Q8IXS2 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC65Q8IXS2 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC19.09■□□□□ 0.65
CCDC65Q8IXS2 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
CCDC65Q8IXS2 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC65Q8IXS2 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC65Q8IXS2 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC65Q8IXS2 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC65Q8IXS2 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC19.09■□□□□ 0.65
CCDC65Q8IXS2 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC19.09■□□□□ 0.65
CCDC65Q8IXS2 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC65Q8IXS2 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC19.08■□□□□ 0.65
CCDC65Q8IXS2 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
CCDC65Q8IXS2 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC19.08■□□□□ 0.65
CCDC65Q8IXS2 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
CCDC65Q8IXS2 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
CCDC65Q8IXS2 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.65
CCDC65Q8IXS2 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC19.08■□□□□ 0.65
CCDC65Q8IXS2 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC19.08■□□□□ 0.65
CCDC65Q8IXS2 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC19.08■□□□□ 0.65
CCDC65Q8IXS2 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.65
CCDC65Q8IXS2 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC19.08■□□□□ 0.65
CCDC65Q8IXS2 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC19.08■□□□□ 0.65
CCDC65Q8IXS2 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC19.08■□□□□ 0.65
CCDC65Q8IXS2 STX3-203ENST00000529177 1571 ntTSL 2 BASIC19.08■□□□□ 0.65
CCDC65Q8IXS2 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC19.08■□□□□ 0.64
CCDC65Q8IXS2 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CCDC65Q8IXS2 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
CCDC65Q8IXS2 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CCDC65Q8IXS2 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC19.08■□□□□ 0.64
CCDC65Q8IXS2 MSRA-206ENST00000521209 814 ntTSL 3 BASIC19.08■□□□□ 0.64
CCDC65Q8IXS2 AF238378.1-201ENST00000526806 358 ntBASIC19.08■□□□□ 0.64
CCDC65Q8IXS2 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC19.08■□□□□ 0.64
CCDC65Q8IXS2 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC19.08■□□□□ 0.64
CCDC65Q8IXS2 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CCDC65Q8IXS2 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC19.08■□□□□ 0.64
CCDC65Q8IXS2 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
CCDC65Q8IXS2 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CCDC65Q8IXS2 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CCDC65Q8IXS2 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CCDC65Q8IXS2 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CCDC65Q8IXS2 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CCDC65Q8IXS2 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
CCDC65Q8IXS2 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CCDC65Q8IXS2 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC65Q8IXS2 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC65Q8IXS2 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC65Q8IXS2 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC65Q8IXS2 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC65Q8IXS2 FRMD8P1-201ENST00000440433 1524 ntBASIC19.07■□□□□ 0.64
CCDC65Q8IXS2 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC19.07■□□□□ 0.64
CCDC65Q8IXS2 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC19.07■□□□□ 0.64
CCDC65Q8IXS2 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC65Q8IXS2 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC65Q8IXS2 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC19.07■□□□□ 0.64
CCDC65Q8IXS2 UNC93B7-201ENST00000509439 705 ntBASIC19.07■□□□□ 0.64
CCDC65Q8IXS2 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC65Q8IXS2 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
CCDC65Q8IXS2 MTDHP4-201ENST00000600287 670 ntBASIC19.07■□□□□ 0.64
CCDC65Q8IXS2 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC65Q8IXS2 AC064862.7-201ENST00000604520 867 ntBASIC19.07■□□□□ 0.64
CCDC65Q8IXS2 AL353135.1-201ENST00000606729 504 ntBASIC19.07■□□□□ 0.64
CCDC65Q8IXS2 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC19.07■□□□□ 0.64
CCDC65Q8IXS2 AL589182.2-201ENST00000619332 1049 ntBASIC19.07■□□□□ 0.64
CCDC65Q8IXS2 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC65Q8IXS2 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
CCDC65Q8IXS2 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC19.07■□□□□ 0.64
CCDC65Q8IXS2 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC65Q8IXS2 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC65Q8IXS2 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC65Q8IXS2 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
CCDC65Q8IXS2 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
CCDC65Q8IXS2 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC65Q8IXS2 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC65Q8IXS2 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
CCDC65Q8IXS2 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC65Q8IXS2 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
CCDC65Q8IXS2 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
CCDC65Q8IXS2 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC65Q8IXS2 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC65Q8IXS2 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC65Q8IXS2 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC19.06■□□□□ 0.64
CCDC65Q8IXS2 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC19.06■□□□□ 0.64
CCDC65Q8IXS2 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
CCDC65Q8IXS2 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC65Q8IXS2 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC65Q8IXS2 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC65Q8IXS2 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC65Q8IXS2 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC19.06■□□□□ 0.64
CCDC65Q8IXS2 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC65Q8IXS2 DUSP5P1-201ENST00000441325 1139 ntBASIC19.06■□□□□ 0.64
CCDC65Q8IXS2 BMF-207ENST00000559701 630 ntTSL 3 BASIC19.06■□□□□ 0.64
CCDC65Q8IXS2 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC65Q8IXS2 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms