Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SKA3Q8IX90 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC15.25■□□□□ 0.03
SKA3Q8IX90 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SKA3Q8IX90 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC15.25■□□□□ 0.03
SKA3Q8IX90 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC15.25■□□□□ 0.03
SKA3Q8IX90 SIGLEC30P-201ENST00000455569 941 ntBASIC15.25■□□□□ 0.03
SKA3Q8IX90 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SKA3Q8IX90 AF238378.1-201ENST00000526806 358 ntBASIC15.25■□□□□ 0.03
SKA3Q8IX90 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC15.25■□□□□ 0.03
SKA3Q8IX90 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC15.25■□□□□ 0.03
SKA3Q8IX90 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SKA3Q8IX90 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SKA3Q8IX90 AC008608.2-201ENST00000606089 416 ntBASIC15.25■□□□□ 0.03
SKA3Q8IX90 AL355877.3-201ENST00000622820 899 ntBASIC15.25■□□□□ 0.03
SKA3Q8IX90 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SKA3Q8IX90 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC15.25■□□□□ 0.03
SKA3Q8IX90 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
SKA3Q8IX90 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
SKA3Q8IX90 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC15.25■□□□□ 0.03
SKA3Q8IX90 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SKA3Q8IX90 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SKA3Q8IX90 SIGLEC16-201ENST00000599858 1437 ntBASIC15.25■□□□□ 0.03
SKA3Q8IX90 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SKA3Q8IX90 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SKA3Q8IX90 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC15.24■□□□□ 0.03
SKA3Q8IX90 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
SKA3Q8IX90 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
SKA3Q8IX90 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC15.24■□□□□ 0.03
SKA3Q8IX90 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC15.24■□□□□ 0.03
SKA3Q8IX90 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC15.24■□□□□ 0.03
SKA3Q8IX90 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC15.24■□□□□ 0.03
SKA3Q8IX90 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC15.24■□□□□ 0.03
SKA3Q8IX90 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SKA3Q8IX90 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
SKA3Q8IX90 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC15.24■□□□□ 0.03
SKA3Q8IX90 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
SKA3Q8IX90 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC15.24■□□□□ 0.03
SKA3Q8IX90 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SKA3Q8IX90 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SKA3Q8IX90 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SKA3Q8IX90 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SKA3Q8IX90 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC15.24■□□□□ 0.03
SKA3Q8IX90 AC108860.2-201ENST00000562760 2183 ntBASIC15.24■□□□□ 0.03
SKA3Q8IX90 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
SKA3Q8IX90 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SKA3Q8IX90 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
SKA3Q8IX90 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC15.24■□□□□ 0.03
SKA3Q8IX90 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SKA3Q8IX90 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SKA3Q8IX90 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SKA3Q8IX90 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SKA3Q8IX90 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SKA3Q8IX90 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC15.24■□□□□ 0.03
SKA3Q8IX90 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC15.24■□□□□ 0.03
SKA3Q8IX90 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC15.24■□□□□ 0.03
SKA3Q8IX90 SAPCD2P3-201ENST00000455031 850 ntBASIC15.24■□□□□ 0.03
SKA3Q8IX90 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
SKA3Q8IX90 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC15.24■□□□□ 0.03
SKA3Q8IX90 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC15.24■□□□□ 0.03
SKA3Q8IX90 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SKA3Q8IX90 AC004817.3-201ENST00000602957 2129 ntBASIC15.24■□□□□ 0.03
SKA3Q8IX90 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SKA3Q8IX90 AC073592.4-201ENST00000623827 446 ntBASIC15.24■□□□□ 0.03
SKA3Q8IX90 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
SKA3Q8IX90 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC15.24■□□□□ 0.03
SKA3Q8IX90 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
SKA3Q8IX90 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC15.24■□□□□ 0.03
SKA3Q8IX90 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SKA3Q8IX90 AL135999.2-201ENST00000622438 1686 ntBASIC15.24■□□□□ 0.03
SKA3Q8IX90 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC15.24■□□□□ 0.03
SKA3Q8IX90 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC15.24■□□□□ 0.03
SKA3Q8IX90 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC15.24■□□□□ 0.03
SKA3Q8IX90 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
SKA3Q8IX90 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
SKA3Q8IX90 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
SKA3Q8IX90 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SKA3Q8IX90 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC15.24■□□□□ 0.03
SKA3Q8IX90 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
SKA3Q8IX90 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC15.24■□□□□ 0.03
SKA3Q8IX90 PAN3-AS1-201ENST00000563843 1351 ntBASIC15.24■□□□□ 0.03
SKA3Q8IX90 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SKA3Q8IX90 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SKA3Q8IX90 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SKA3Q8IX90 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SKA3Q8IX90 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SKA3Q8IX90 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SKA3Q8IX90 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SKA3Q8IX90 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
SKA3Q8IX90 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC15.23■□□□□ 0.03
SKA3Q8IX90 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SKA3Q8IX90 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SKA3Q8IX90 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC15.23■□□□□ 0.03
SKA3Q8IX90 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SKA3Q8IX90 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC15.23■□□□□ 0.03
SKA3Q8IX90 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC15.23■□□□□ 0.03
SKA3Q8IX90 AL450487.1-201ENST00000426799 995 ntBASIC15.23■□□□□ 0.03
SKA3Q8IX90 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SKA3Q8IX90 FGFR3P6-201ENST00000457012 610 ntBASIC15.23■□□□□ 0.03
SKA3Q8IX90 EMBP1-201ENST00000458200 901 ntBASIC15.23■□□□□ 0.03
SKA3Q8IX90 BX005266.1-201ENST00000473402 457 ntBASIC15.23■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms