Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
USP54Q70EL1 AC005225.4-201ENST00000557330 545 ntBASIC22.57■■□□□ 1.2
USP54Q70EL1 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
USP54Q70EL1 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
USP54Q70EL1 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC22.57■■□□□ 1.2
USP54Q70EL1 AP001350.2-201ENST00000625104 1094 ntBASIC22.57■■□□□ 1.2
USP54Q70EL1 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
USP54Q70EL1 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC22.57■■□□□ 1.2
USP54Q70EL1 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
USP54Q70EL1 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
USP54Q70EL1 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC22.57■■□□□ 1.2
USP54Q70EL1 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
USP54Q70EL1 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
USP54Q70EL1 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC22.57■■□□□ 1.2
USP54Q70EL1 TDG-209ENST00000544861 1387 ntTSL 2 BASIC22.57■■□□□ 1.2
USP54Q70EL1 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
USP54Q70EL1 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
USP54Q70EL1 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC22.56■■□□□ 1.2
USP54Q70EL1 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC22.56■■□□□ 1.2
USP54Q70EL1 RAC2-204ENST00000406508 893 ntTSL 5 BASIC22.56■■□□□ 1.2
USP54Q70EL1 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
USP54Q70EL1 AC241585.1-201ENST00000433527 519 ntBASIC22.56■■□□□ 1.2
USP54Q70EL1 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC22.56■■□□□ 1.2
USP54Q70EL1 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC22.56■■□□□ 1.2
USP54Q70EL1 AC190387.1-201ENST00000551683 408 ntBASIC22.56■■□□□ 1.2
USP54Q70EL1 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC22.56■■□□□ 1.2
USP54Q70EL1 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC22.56■■□□□ 1.2
USP54Q70EL1 COQ4-205ENST00000609948 956 ntTSL 2 BASIC22.56■■□□□ 1.2
USP54Q70EL1 AL138828.2-201ENST00000615812 383 ntBASIC22.56■■□□□ 1.2
USP54Q70EL1 AF228730.6-201ENST00000641497 218 ntBASIC22.56■■□□□ 1.2
USP54Q70EL1 AC084121.3-201ENST00000641716 218 ntBASIC22.56■■□□□ 1.2
USP54Q70EL1 AC105233.6-201ENST00000642093 218 ntBASIC22.56■■□□□ 1.2
USP54Q70EL1 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC22.56■■□□□ 1.2
USP54Q70EL1 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
USP54Q70EL1 SNX33P1-201ENST00000592116 1762 ntBASIC22.56■■□□□ 1.2
USP54Q70EL1 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
USP54Q70EL1 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
USP54Q70EL1 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC22.56■■□□□ 1.2
USP54Q70EL1 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
USP54Q70EL1 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC22.56■■□□□ 1.2
USP54Q70EL1 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC22.56■■□□□ 1.2
USP54Q70EL1 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
USP54Q70EL1 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
USP54Q70EL1 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC22.56■■□□□ 1.2
USP54Q70EL1 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC22.55■■□□□ 1.2
USP54Q70EL1 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
USP54Q70EL1 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC22.55■■□□□ 1.2
USP54Q70EL1 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
USP54Q70EL1 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
USP54Q70EL1 METTL26-204ENST00000397665 558 ntTSL 2 BASIC22.55■■□□□ 1.2
USP54Q70EL1 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC22.55■■□□□ 1.2
USP54Q70EL1 WBP2-203ENST00000433525 928 ntTSL 2 BASIC22.55■■□□□ 1.2
USP54Q70EL1 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC22.55■■□□□ 1.2
USP54Q70EL1 IGHV3-42-201ENST00000520410 361 ntBASIC22.55■■□□□ 1.2
USP54Q70EL1 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC22.55■■□□□ 1.2
USP54Q70EL1 LINC02560-201ENST00000596379 459 ntBASIC22.55■■□□□ 1.2
USP54Q70EL1 AL844908.2-201ENST00000609461 460 ntBASIC22.55■■□□□ 1.2
USP54Q70EL1 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
USP54Q70EL1 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
USP54Q70EL1 AP3S2-216ENST00000617003 1561 ntBASIC22.55■■□□□ 1.2
USP54Q70EL1 TUBB8P12-201ENST00000308911 1335 ntBASIC22.55■■□□□ 1.2
USP54Q70EL1 TUBB7P-202ENST00000428444 1305 ntBASIC22.55■■□□□ 1.2
USP54Q70EL1 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
USP54Q70EL1 TUBB8P7-204ENST00000567960 1332 ntBASIC22.55■■□□□ 1.2
USP54Q70EL1 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
USP54Q70EL1 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
USP54Q70EL1 RHBDF1P1-201ENST00000427504 1941 ntBASIC22.55■■□□□ 1.2
USP54Q70EL1 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
USP54Q70EL1 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC22.55■■□□□ 1.2
USP54Q70EL1 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
USP54Q70EL1 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
USP54Q70EL1 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC22.55■■□□□ 1.2
USP54Q70EL1 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
USP54Q70EL1 AC015922.1-201ENST00000421102 1152 ntBASIC22.55■■□□□ 1.2
USP54Q70EL1 TERF1P3-201ENST00000505638 1227 ntBASIC22.55■■□□□ 1.2
USP54Q70EL1 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
USP54Q70EL1 MIR4453-201ENST00000584019 89 ntBASIC22.55■■□□□ 1.2
USP54Q70EL1 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
USP54Q70EL1 AC004790.1-201ENST00000612686 536 ntBASIC22.55■■□□□ 1.2
USP54Q70EL1 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC22.54■■□□□ 1.2
USP54Q70EL1 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
USP54Q70EL1 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC22.54■■□□□ 1.2
USP54Q70EL1 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
USP54Q70EL1 HLA-H-201ENST00000383620 1096 ntBASIC22.54■■□□□ 1.2
USP54Q70EL1 PP14571-201ENST00000404327 934 ntTSL 2 BASIC22.54■■□□□ 1.2
USP54Q70EL1 GSAP-205ENST00000430584 600 ntTSL 5 BASIC22.54■■□□□ 1.2
USP54Q70EL1 OARD1-208ENST00000469104 704 ntTSL 2 BASIC22.54■■□□□ 1.2
USP54Q70EL1 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC22.54■■□□□ 1.2
USP54Q70EL1 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC22.54■■□□□ 1.2
USP54Q70EL1 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
USP54Q70EL1 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
USP54Q70EL1 AC022144.1-201ENST00000602255 1580 ntBASIC22.53■■□□□ 1.2
USP54Q70EL1 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC22.53■■□□□ 1.2
USP54Q70EL1 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC22.53■■□□□ 1.2
USP54Q70EL1 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC22.53■■□□□ 1.2
USP54Q70EL1 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
USP54Q70EL1 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
USP54Q70EL1 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
USP54Q70EL1 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
USP54Q70EL1 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC22.53■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms