Protein–RNA interactions for Protein: Q06546

GABPA, GA-binding protein alpha chain, humanhuman

Predictions only

Length 454 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GABPAQ06546 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
GABPAQ06546 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
GABPAQ06546 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
GABPAQ06546 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC20.04■□□□□ 0.8
GABPAQ06546 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
GABPAQ06546 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC20.04■□□□□ 0.8
GABPAQ06546 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
GABPAQ06546 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
GABPAQ06546 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
GABPAQ06546 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC20.04■□□□□ 0.8
GABPAQ06546 AC112191.1-201ENST00000523689 701 ntBASIC20.04■□□□□ 0.8
GABPAQ06546 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC20.04■□□□□ 0.8
GABPAQ06546 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC20.04■□□□□ 0.8
GABPAQ06546 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
GABPAQ06546 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC20.04■□□□□ 0.8
GABPAQ06546 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
GABPAQ06546 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
GABPAQ06546 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
GABPAQ06546 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
GABPAQ06546 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
GABPAQ06546 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
GABPAQ06546 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
GABPAQ06546 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
GABPAQ06546 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
GABPAQ06546 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC20.03■□□□□ 0.8
GABPAQ06546 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
GABPAQ06546 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
GABPAQ06546 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC20.03■□□□□ 0.8
GABPAQ06546 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
GABPAQ06546 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
GABPAQ06546 AC002056.1-201ENST00000395613 760 ntBASIC20.03■□□□□ 0.8
GABPAQ06546 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
GABPAQ06546 AC004461.1-201ENST00000412461 403 ntBASIC20.03■□□□□ 0.8
GABPAQ06546 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
GABPAQ06546 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC20.03■□□□□ 0.8
GABPAQ06546 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
GABPAQ06546 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC20.03■□□□□ 0.8
GABPAQ06546 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC20.03■□□□□ 0.8
GABPAQ06546 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
GABPAQ06546 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
GABPAQ06546 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
GABPAQ06546 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
GABPAQ06546 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
GABPAQ06546 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC20.03■□□□□ 0.8
GABPAQ06546 SLC22A20-204ENST00000530038 1673 ntBASIC20.03■□□□□ 0.8
GABPAQ06546 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
GABPAQ06546 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
GABPAQ06546 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
GABPAQ06546 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
GABPAQ06546 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC20.02■□□□□ 0.8
GABPAQ06546 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
GABPAQ06546 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC20.02■□□□□ 0.8
GABPAQ06546 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC20.02■□□□□ 0.8
GABPAQ06546 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
GABPAQ06546 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC20.02■□□□□ 0.8
GABPAQ06546 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC20.02■□□□□ 0.8
GABPAQ06546 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
GABPAQ06546 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
GABPAQ06546 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
GABPAQ06546 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
GABPAQ06546 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
GABPAQ06546 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC20.02■□□□□ 0.8
GABPAQ06546 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
GABPAQ06546 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC20.02■□□□□ 0.8
GABPAQ06546 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC20.02■□□□□ 0.8
GABPAQ06546 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
GABPAQ06546 METTL21AP1-201ENST00000438852 635 ntBASIC20.02■□□□□ 0.8
GABPAQ06546 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC20.02■□□□□ 0.8
GABPAQ06546 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC20.02■□□□□ 0.8
GABPAQ06546 CCND1-203ENST00000536559 553 ntTSL 3 BASIC20.02■□□□□ 0.8
GABPAQ06546 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC20.02■□□□□ 0.8
GABPAQ06546 AC027796.2-201ENST00000575326 344 ntBASIC20.02■□□□□ 0.8
GABPAQ06546 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC20.02■□□□□ 0.8
GABPAQ06546 AC022145.2-201ENST00000598203 171 ntBASIC20.02■□□□□ 0.8
GABPAQ06546 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC20.02■□□□□ 0.8
GABPAQ06546 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC20.02■□□□□ 0.8
GABPAQ06546 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
GABPAQ06546 TOP3BP1-201ENST00000420768 1380 ntBASIC20.02■□□□□ 0.8
GABPAQ06546 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
GABPAQ06546 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
GABPAQ06546 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
GABPAQ06546 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
GABPAQ06546 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
GABPAQ06546 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
GABPAQ06546 AL133373.2-201ENST00000623187 2828 ntBASIC20.02■□□□□ 0.79
GABPAQ06546 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
GABPAQ06546 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC20.02■□□□□ 0.79
GABPAQ06546 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC20.02■□□□□ 0.79
GABPAQ06546 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC20.02■□□□□ 0.79
GABPAQ06546 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
GABPAQ06546 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC20.01■□□□□ 0.79
GABPAQ06546 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
GABPAQ06546 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
GABPAQ06546 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
GABPAQ06546 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
GABPAQ06546 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
GABPAQ06546 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC20.01■□□□□ 0.79
GABPAQ06546 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
GABPAQ06546 AL353732.1-201ENST00000569618 1459 ntBASIC20.01■□□□□ 0.79
GABPAQ06546 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms