Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
LIM2P55344 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
LIM2P55344 AC139887.3-201ENST00000568585 713 ntBASIC16.32■□□□□ 0.2
LIM2P55344 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LIM2P55344 SDCCAG3P1-201ENST00000589292 1150 ntBASIC16.32■□□□□ 0.2
LIM2P55344 AL121894.2-201ENST00000602977 491 ntBASIC16.32■□□□□ 0.2
LIM2P55344 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LIM2P55344 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
LIM2P55344 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
LIM2P55344 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LIM2P55344 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
LIM2P55344 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LIM2P55344 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC16.31■□□□□ 0.2
LIM2P55344 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIM2P55344 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
LIM2P55344 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LIM2P55344 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIM2P55344 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIM2P55344 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC16.31■□□□□ 0.2
LIM2P55344 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC16.31■□□□□ 0.2
LIM2P55344 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIM2P55344 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC16.31■□□□□ 0.2
LIM2P55344 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LIM2P55344 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
LIM2P55344 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIM2P55344 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LIM2P55344 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
LIM2P55344 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIM2P55344 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
LIM2P55344 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIM2P55344 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIM2P55344 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC16.31■□□□□ 0.2
LIM2P55344 MED22-202ENST00000371999 987 ntTSL 3 BASIC16.31■□□□□ 0.2
LIM2P55344 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC16.31■□□□□ 0.2
LIM2P55344 MOK-208ENST00000519058 917 ntTSL 2 BASIC16.31■□□□□ 0.2
LIM2P55344 OR7E14P-202ENST00000530490 1290 ntBASIC16.31■□□□□ 0.2
LIM2P55344 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC16.31■□□□□ 0.2
LIM2P55344 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC16.31■□□□□ 0.2
LIM2P55344 AL353135.1-201ENST00000606729 504 ntBASIC16.31■□□□□ 0.2
LIM2P55344 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LIM2P55344 AC148477.8-201ENST00000624298 468 ntBASIC16.31■□□□□ 0.2
LIM2P55344 AC107918.4-202ENST00000641623 219 ntBASIC16.31■□□□□ 0.2
LIM2P55344 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIM2P55344 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC16.31■□□□□ 0.2
LIM2P55344 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIM2P55344 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIM2P55344 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIM2P55344 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIM2P55344 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIM2P55344 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LIM2P55344 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIM2P55344 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIM2P55344 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIM2P55344 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIM2P55344 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
LIM2P55344 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIM2P55344 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LIM2P55344 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LIM2P55344 EGFEM1P-202ENST00000431685 1563 ntBASIC16.3■□□□□ 0.2
LIM2P55344 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LIM2P55344 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
LIM2P55344 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC16.3■□□□□ 0.2
LIM2P55344 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LIM2P55344 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC16.3■□□□□ 0.2
LIM2P55344 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
LIM2P55344 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
LIM2P55344 RHBDF1P1-201ENST00000427504 1941 ntBASIC16.3■□□□□ 0.2
LIM2P55344 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LIM2P55344 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC16.3■□□□□ 0.2
LIM2P55344 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC16.3■□□□□ 0.2
LIM2P55344 LAGE3P1-201ENST00000425356 484 ntBASIC16.3■□□□□ 0.2
LIM2P55344 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC16.3■□□□□ 0.2
LIM2P55344 HNRNPDP1-201ENST00000439535 754 ntBASIC16.3■□□□□ 0.2
LIM2P55344 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC16.3■□□□□ 0.2
LIM2P55344 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC16.3■□□□□ 0.2
LIM2P55344 AL139424.1-201ENST00000607572 797 ntBASIC16.3■□□□□ 0.2
LIM2P55344 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC16.3■□□□□ 0.2
LIM2P55344 AC004706.3-202ENST00000621574 984 ntBASIC16.3■□□□□ 0.2
LIM2P55344 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
LIM2P55344 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LIM2P55344 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LIM2P55344 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LIM2P55344 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LIM2P55344 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC16.3■□□□□ 0.2
LIM2P55344 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
LIM2P55344 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC16.3■□□□□ 0.2
LIM2P55344 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LIM2P55344 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LIM2P55344 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
LIM2P55344 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC16.29■□□□□ 0.2
LIM2P55344 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC16.29■□□□□ 0.2
LIM2P55344 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
LIM2P55344 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIM2P55344 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIM2P55344 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIM2P55344 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIM2P55344 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LIM2P55344 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIM2P55344 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LIM2P55344 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms