Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC15.18■□□□□ 0.02
SOX2P48431 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SOX2P48431 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
SOX2P48431 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC15.18■□□□□ 0.02
SOX2P48431 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
SOX2P48431 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SOX2P48431 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
SOX2P48431 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SOX2P48431 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
SOX2P48431 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC15.18■□□□□ 0.02
SOX2P48431 LIN28AP1-201ENST00000429574 405 ntBASIC15.18■□□□□ 0.02
SOX2P48431 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC15.18■□□□□ 0.02
SOX2P48431 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC15.18■□□□□ 0.02
SOX2P48431 ATP5G1P1-201ENST00000448724 379 ntBASIC15.18■□□□□ 0.02
SOX2P48431 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
SOX2P48431 CNP-204ENST00000472031 1019 ntTSL 2 BASIC15.18■□□□□ 0.02
SOX2P48431 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC15.18■□□□□ 0.02
SOX2P48431 DUT-205ENST00000558813 769 ntTSL 2 BASIC15.18■□□□□ 0.02
SOX2P48431 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC15.18■□□□□ 0.02
SOX2P48431 ANKRD20A8P-203ENST00000641373 517 ntBASIC15.18■□□□□ 0.02
SOX2P48431 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
SOX2P48431 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC15.18■□□□□ 0.02
SOX2P48431 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SOX2P48431 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
SOX2P48431 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC15.18■□□□□ 0.02
SOX2P48431 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
SOX2P48431 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC15.18■□□□□ 0.02
SOX2P48431 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
SOX2P48431 AL662844.4-201ENST00000606367 2838 ntBASIC15.18■□□□□ 0.02
SOX2P48431 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
SOX2P48431 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SOX2P48431 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SOX2P48431 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC15.18■□□□□ 0.02
SOX2P48431 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
SOX2P48431 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC15.18■□□□□ 0.02
SOX2P48431 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC15.18■□□□□ 0.02
SOX2P48431 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC15.18■□□□□ 0.02
SOX2P48431 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
SOX2P48431 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC15.18■□□□□ 0.02
SOX2P48431 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
SOX2P48431 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SOX2P48431 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SOX2P48431 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SOX2P48431 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SOX2P48431 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC15.17■□□□□ 0.02
SOX2P48431 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC15.17■□□□□ 0.02
SOX2P48431 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SOX2P48431 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
SOX2P48431 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
SOX2P48431 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC15.17■□□□□ 0.02
SOX2P48431 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
SOX2P48431 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SOX2P48431 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC15.17■□□□□ 0.02
SOX2P48431 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
SOX2P48431 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC15.17■□□□□ 0.02
SOX2P48431 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SOX2P48431 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
SOX2P48431 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SOX2P48431 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SOX2P48431 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SOX2P48431 COX5BP2-201ENST00000392354 334 ntBASIC15.17■□□□□ 0.02
SOX2P48431 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC15.17■□□□□ 0.02
SOX2P48431 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SOX2P48431 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC15.17■□□□□ 0.02
SOX2P48431 COX11P1-201ENST00000489116 835 ntBASIC15.17■□□□□ 0.02
SOX2P48431 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC15.17■□□□□ 0.02
SOX2P48431 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC15.17■□□□□ 0.02
SOX2P48431 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC15.17■□□□□ 0.02
SOX2P48431 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC15.17■□□□□ 0.02
SOX2P48431 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC15.17■□□□□ 0.02
SOX2P48431 GPR32P1-201ENST00000601788 811 ntBASIC15.17■□□□□ 0.02
SOX2P48431 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
SOX2P48431 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SOX2P48431 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
SOX2P48431 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
SOX2P48431 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SOX2P48431 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC15.17■□□□□ 0.02
SOX2P48431 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC15.17■□□□□ 0.02
SOX2P48431 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
SOX2P48431 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SOX2P48431 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
SOX2P48431 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SOX2P48431 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
SOX2P48431 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SOX2P48431 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
SOX2P48431 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SOX2P48431 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SOX2P48431 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SOX2P48431 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SOX2P48431 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC15.16■□□□□ 0.02
SOX2P48431 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
SOX2P48431 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC15.16■□□□□ 0.02
SOX2P48431 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SOX2P48431 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SOX2P48431 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SOX2P48431 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SOX2P48431 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
SOX2P48431 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SOX2P48431 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC15.16■□□□□ 0.02
SOX2P48431 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms