Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
RFC4P35249 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
RFC4P35249 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
RFC4P35249 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
RFC4P35249 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC21.41■■□□□ 1.02
RFC4P35249 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
RFC4P35249 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC21.41■■□□□ 1.02
RFC4P35249 AC004233.3-201ENST00000607794 1269 ntBASIC21.41■■□□□ 1.02
RFC4P35249 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
RFC4P35249 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
RFC4P35249 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
RFC4P35249 LYSMD4-203ENST00000378904 2122 ntBASIC21.41■■□□□ 1.02
RFC4P35249 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
RFC4P35249 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
RFC4P35249 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
RFC4P35249 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
RFC4P35249 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC21.41■■□□□ 1.02
RFC4P35249 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC21.41■■□□□ 1.02
RFC4P35249 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
RFC4P35249 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
RFC4P35249 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
RFC4P35249 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
RFC4P35249 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
RFC4P35249 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC21.4■■□□□ 1.02
RFC4P35249 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
RFC4P35249 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
RFC4P35249 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC21.4■■□□□ 1.02
RFC4P35249 COX5BP8-201ENST00000416911 349 ntBASIC21.4■■□□□ 1.02
RFC4P35249 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC21.4■■□□□ 1.02
RFC4P35249 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC21.4■■□□□ 1.02
RFC4P35249 NOP2-220ENST00000545915 630 ntTSL 2 BASIC21.4■■□□□ 1.02
RFC4P35249 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
RFC4P35249 AC138028.4-201ENST00000564984 1845 ntBASIC21.4■■□□□ 1.02
RFC4P35249 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
RFC4P35249 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
RFC4P35249 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC21.4■■□□□ 1.02
RFC4P35249 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
RFC4P35249 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
RFC4P35249 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
RFC4P35249 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
RFC4P35249 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
RFC4P35249 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
RFC4P35249 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.39■■□□□ 1.02
RFC4P35249 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
RFC4P35249 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC21.39■■□□□ 1.02
RFC4P35249 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
RFC4P35249 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC21.39■■□□□ 1.02
RFC4P35249 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.02
RFC4P35249 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC21.39■■□□□ 1.01
RFC4P35249 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.01
RFC4P35249 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC21.39■■□□□ 1.01
RFC4P35249 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC21.39■■□□□ 1.01
RFC4P35249 TSSK5P-201ENST00000423978 907 ntBASIC21.39■■□□□ 1.01
RFC4P35249 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC21.39■■□□□ 1.01
RFC4P35249 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC21.39■■□□□ 1.01
RFC4P35249 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC21.39■■□□□ 1.01
RFC4P35249 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC21.39■■□□□ 1.01
RFC4P35249 SRP9-204ENST00000619790 377 ntTSL 2 BASIC21.39■■□□□ 1.01
RFC4P35249 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC21.39■■□□□ 1.01
RFC4P35249 AC016027.1-202ENST00000607927 1699 ntBASIC21.39■■□□□ 1.01
RFC4P35249 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC21.39■■□□□ 1.01
RFC4P35249 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC21.39■■□□□ 1.01
RFC4P35249 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
RFC4P35249 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
RFC4P35249 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
RFC4P35249 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
RFC4P35249 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
RFC4P35249 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC21.38■■□□□ 1.01
RFC4P35249 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
RFC4P35249 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
RFC4P35249 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
RFC4P35249 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
RFC4P35249 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC21.38■■□□□ 1.01
RFC4P35249 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
RFC4P35249 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC21.38■■□□□ 1.01
RFC4P35249 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
RFC4P35249 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
RFC4P35249 AL138918.1-201ENST00000568306 659 ntBASIC21.38■■□□□ 1.01
RFC4P35249 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC21.38■■□□□ 1.01
RFC4P35249 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC21.38■■□□□ 1.01
RFC4P35249 NKG7-205ENST00000600427 520 ntTSL 3 BASIC21.38■■□□□ 1.01
RFC4P35249 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
RFC4P35249 AC022144.1-201ENST00000602255 1580 ntBASIC21.38■■□□□ 1.01
RFC4P35249 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
RFC4P35249 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
RFC4P35249 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC21.38■■□□□ 1.01
RFC4P35249 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
RFC4P35249 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
RFC4P35249 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
RFC4P35249 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC21.38■■□□□ 1.01
RFC4P35249 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC21.38■■□□□ 1.01
RFC4P35249 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
RFC4P35249 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC21.38■■□□□ 1.01
RFC4P35249 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
RFC4P35249 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
RFC4P35249 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC21.37■■□□□ 1.01
RFC4P35249 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC21.37■■□□□ 1.01
RFC4P35249 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
RFC4P35249 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
RFC4P35249 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms