Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 TUBB8P12-201ENST00000308911 1335 ntBASIC20.27■□□□□ 0.83
HMGB1P09429 TUBB7P-202ENST00000428444 1305 ntBASIC20.27■□□□□ 0.83
HMGB1P09429 TUBB8P7-204ENST00000567960 1332 ntBASIC20.27■□□□□ 0.83
HMGB1P09429 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
HMGB1P09429 AC005915.1-201ENST00000624912 2018 ntBASIC20.26■□□□□ 0.83
HMGB1P09429 NKILA-202ENST00000614771 2598 ntBASIC20.26■□□□□ 0.83
HMGB1P09429 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
HMGB1P09429 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HMGB1P09429 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC20.26■□□□□ 0.83
HMGB1P09429 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HMGB1P09429 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HMGB1P09429 IPPK-202ENST00000375522 882 ntTSL 3 BASIC20.26■□□□□ 0.83
HMGB1P09429 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
HMGB1P09429 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
HMGB1P09429 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
HMGB1P09429 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
HMGB1P09429 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
HMGB1P09429 AF238378.1-201ENST00000526806 358 ntBASIC20.26■□□□□ 0.83
HMGB1P09429 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC20.26■□□□□ 0.83
HMGB1P09429 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC20.26■□□□□ 0.83
HMGB1P09429 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
HMGB1P09429 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HMGB1P09429 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC20.26■□□□□ 0.83
HMGB1P09429 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC20.26■□□□□ 0.83
HMGB1P09429 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
HMGB1P09429 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HMGB1P09429 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC20.26■□□□□ 0.83
HMGB1P09429 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC20.26■□□□□ 0.83
HMGB1P09429 HNRNPRP1-201ENST00000453465 1695 ntBASIC20.26■□□□□ 0.83
HMGB1P09429 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HMGB1P09429 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
HMGB1P09429 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HMGB1P09429 AC106886.4-201ENST00000623557 2502 ntBASIC20.25■□□□□ 0.83
HMGB1P09429 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
HMGB1P09429 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
HMGB1P09429 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
HMGB1P09429 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
HMGB1P09429 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC20.25■□□□□ 0.83
HMGB1P09429 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
HMGB1P09429 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC20.25■□□□□ 0.83
HMGB1P09429 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HMGB1P09429 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
HMGB1P09429 HIST2H3DP1-201ENST00000401004 416 ntBASIC20.25■□□□□ 0.83
HMGB1P09429 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC20.25■□□□□ 0.83
HMGB1P09429 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
HMGB1P09429 BMF-207ENST00000559701 630 ntTSL 3 BASIC20.25■□□□□ 0.83
HMGB1P09429 RNF151-202ENST00000569210 853 ntTSL 2 BASIC20.25■□□□□ 0.83
HMGB1P09429 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HMGB1P09429 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HMGB1P09429 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
HMGB1P09429 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
HMGB1P09429 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC20.25■□□□□ 0.83
HMGB1P09429 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC20.25■□□□□ 0.83
HMGB1P09429 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC20.25■□□□□ 0.83
HMGB1P09429 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
HMGB1P09429 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC20.25■□□□□ 0.83
HMGB1P09429 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
HMGB1P09429 AC011270.2-201ENST00000624293 2550 ntBASIC20.25■□□□□ 0.83
HMGB1P09429 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
HMGB1P09429 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
HMGB1P09429 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
HMGB1P09429 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
HMGB1P09429 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
HMGB1P09429 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
HMGB1P09429 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC20.24■□□□□ 0.83
HMGB1P09429 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
HMGB1P09429 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC20.24■□□□□ 0.83
HMGB1P09429 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
HMGB1P09429 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
HMGB1P09429 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC20.24■□□□□ 0.83
HMGB1P09429 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HMGB1P09429 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC20.24■□□□□ 0.83
HMGB1P09429 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
HMGB1P09429 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC20.24■□□□□ 0.83
HMGB1P09429 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HMGB1P09429 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HMGB1P09429 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
HMGB1P09429 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
HMGB1P09429 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HMGB1P09429 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC20.24■□□□□ 0.83
HMGB1P09429 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC20.24■□□□□ 0.83
HMGB1P09429 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC20.24■□□□□ 0.83
HMGB1P09429 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC20.24■□□□□ 0.83
HMGB1P09429 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
HMGB1P09429 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
HMGB1P09429 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC20.24■□□□□ 0.83
HMGB1P09429 AC004706.3-202ENST00000621574 984 ntBASIC20.24■□□□□ 0.83
HMGB1P09429 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC20.24■□□□□ 0.83
HMGB1P09429 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC20.24■□□□□ 0.83
HMGB1P09429 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
HMGB1P09429 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC20.24■□□□□ 0.83
HMGB1P09429 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
HMGB1P09429 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC20.24■□□□□ 0.83
HMGB1P09429 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
HMGB1P09429 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
HMGB1P09429 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
HMGB1P09429 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC20.24■□□□□ 0.83
HMGB1P09429 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC20.24■□□□□ 0.83
HMGB1P09429 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC20.23■□□□□ 0.83
HMGB1P09429 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms