Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
LDLRP01130 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
LDLRP01130 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
LDLRP01130 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LDLRP01130 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LDLRP01130 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LDLRP01130 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC16.66■□□□□ 0.26
LDLRP01130 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC16.66■□□□□ 0.26
LDLRP01130 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
LDLRP01130 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LDLRP01130 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LDLRP01130 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
LDLRP01130 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
LDLRP01130 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
LDLRP01130 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LDLRP01130 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LDLRP01130 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LDLRP01130 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
LDLRP01130 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LDLRP01130 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LDLRP01130 AC092183.1-201ENST00000469884 875 ntBASIC16.66■□□□□ 0.26
LDLRP01130 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC16.66■□□□□ 0.26
LDLRP01130 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC16.66■□□□□ 0.26
LDLRP01130 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC16.66■□□□□ 0.26
LDLRP01130 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
LDLRP01130 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LDLRP01130 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC16.66■□□□□ 0.26
LDLRP01130 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC16.66■□□□□ 0.26
LDLRP01130 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LDLRP01130 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
LDLRP01130 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LDLRP01130 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC16.66■□□□□ 0.26
LDLRP01130 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
LDLRP01130 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
LDLRP01130 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
LDLRP01130 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LDLRP01130 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC16.66■□□□□ 0.26
LDLRP01130 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LDLRP01130 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC16.65■□□□□ 0.26
LDLRP01130 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LDLRP01130 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LDLRP01130 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
LDLRP01130 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC16.65■□□□□ 0.26
LDLRP01130 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LDLRP01130 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
LDLRP01130 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LDLRP01130 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LDLRP01130 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
LDLRP01130 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LDLRP01130 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
LDLRP01130 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LDLRP01130 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LDLRP01130 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LDLRP01130 BAALC-202ENST00000306391 243 ntTSL 5 BASIC16.65■□□□□ 0.26
LDLRP01130 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC16.65■□□□□ 0.26
LDLRP01130 BAALC-204ENST00000330955 222 ntTSL 5 BASIC16.65■□□□□ 0.26
LDLRP01130 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC16.65■□□□□ 0.26
LDLRP01130 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LDLRP01130 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LDLRP01130 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC16.65■□□□□ 0.26
LDLRP01130 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC16.65■□□□□ 0.26
LDLRP01130 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC16.65■□□□□ 0.26
LDLRP01130 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC16.65■□□□□ 0.26
LDLRP01130 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
LDLRP01130 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LDLRP01130 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LDLRP01130 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC16.65■□□□□ 0.26
LDLRP01130 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC16.65■□□□□ 0.26
LDLRP01130 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC16.65■□□□□ 0.26
LDLRP01130 AC074051.2-201ENST00000565115 352 ntBASIC16.65■□□□□ 0.26
LDLRP01130 TK1-205ENST00000590862 642 ntTSL 3 BASIC16.65■□□□□ 0.26
LDLRP01130 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
LDLRP01130 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC16.65■□□□□ 0.26
LDLRP01130 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LDLRP01130 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
LDLRP01130 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC16.65■□□□□ 0.26
LDLRP01130 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LDLRP01130 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
LDLRP01130 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LDLRP01130 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.26
LDLRP01130 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
LDLRP01130 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.26
LDLRP01130 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC16.64■□□□□ 0.26
LDLRP01130 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
LDLRP01130 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
LDLRP01130 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
LDLRP01130 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LDLRP01130 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LDLRP01130 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
LDLRP01130 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
LDLRP01130 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LDLRP01130 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LDLRP01130 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LDLRP01130 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
LDLRP01130 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LDLRP01130 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
LDLRP01130 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
LDLRP01130 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
LDLRP01130 PPIE-208ENST00000470213 927 ntTSL 3 BASIC16.64■□□□□ 0.25
LDLRP01130 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms