Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SEMA3DO95025 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
SEMA3DO95025 AC079776.2-201ENST00000641154 1609 ntBASIC16.51■□□□□ 0.23
SEMA3DO95025 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SEMA3DO95025 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SEMA3DO95025 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SEMA3DO95025 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC16.51■□□□□ 0.23
SEMA3DO95025 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC16.51■□□□□ 0.23
SEMA3DO95025 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
SEMA3DO95025 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SEMA3DO95025 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SEMA3DO95025 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SEMA3DO95025 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC16.51■□□□□ 0.23
SEMA3DO95025 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SEMA3DO95025 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SEMA3DO95025 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
SEMA3DO95025 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
SEMA3DO95025 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
SEMA3DO95025 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SEMA3DO95025 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SEMA3DO95025 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
SEMA3DO95025 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SEMA3DO95025 MED16-201ENST00000269814 1199 ntTSL 5 BASIC16.5■□□□□ 0.23
SEMA3DO95025 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SEMA3DO95025 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
SEMA3DO95025 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SEMA3DO95025 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
SEMA3DO95025 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
SEMA3DO95025 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SEMA3DO95025 FOSL1P1-201ENST00000511041 816 ntBASIC16.5■□□□□ 0.23
SEMA3DO95025 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC16.5■□□□□ 0.23
SEMA3DO95025 AL121772.3-201ENST00000610840 674 ntBASIC16.5■□□□□ 0.23
SEMA3DO95025 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC16.5■□□□□ 0.23
SEMA3DO95025 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SEMA3DO95025 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
SEMA3DO95025 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
SEMA3DO95025 AP005117.1-201ENST00000584346 1413 ntBASIC16.5■□□□□ 0.23
SEMA3DO95025 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
SEMA3DO95025 AL356309.3-201ENST00000624132 1934 ntBASIC16.5■□□□□ 0.23
SEMA3DO95025 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SEMA3DO95025 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
SEMA3DO95025 NF2-208ENST00000403435 2568 ntTSL 5 BASIC16.5■□□□□ 0.23
SEMA3DO95025 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SEMA3DO95025 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SEMA3DO95025 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SEMA3DO95025 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
SEMA3DO95025 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
SEMA3DO95025 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
SEMA3DO95025 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
SEMA3DO95025 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
SEMA3DO95025 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
SEMA3DO95025 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SEMA3DO95025 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SEMA3DO95025 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SEMA3DO95025 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
SEMA3DO95025 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SEMA3DO95025 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SEMA3DO95025 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC16.49■□□□□ 0.23
SEMA3DO95025 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SEMA3DO95025 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
SEMA3DO95025 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC16.49■□□□□ 0.23
SEMA3DO95025 AC148477.5-201ENST00000625164 1645 ntBASIC16.49■□□□□ 0.23
SEMA3DO95025 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
SEMA3DO95025 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SEMA3DO95025 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC16.49■□□□□ 0.23
SEMA3DO95025 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SEMA3DO95025 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
SEMA3DO95025 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SEMA3DO95025 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SEMA3DO95025 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC16.49■□□□□ 0.23
SEMA3DO95025 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC16.49■□□□□ 0.23
SEMA3DO95025 RBM17P3-201ENST00000417687 1192 ntBASIC16.49■□□□□ 0.23
SEMA3DO95025 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC16.49■□□□□ 0.23
SEMA3DO95025 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC16.49■□□□□ 0.23
SEMA3DO95025 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SEMA3DO95025 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC16.49■□□□□ 0.23
SEMA3DO95025 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC16.49■□□□□ 0.23
SEMA3DO95025 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC16.49■□□□□ 0.23
SEMA3DO95025 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC16.49■□□□□ 0.23
SEMA3DO95025 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC16.49■□□□□ 0.23
SEMA3DO95025 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SEMA3DO95025 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SEMA3DO95025 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SEMA3DO95025 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SEMA3DO95025 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC16.49■□□□□ 0.23
SEMA3DO95025 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
SEMA3DO95025 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SEMA3DO95025 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SEMA3DO95025 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SEMA3DO95025 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SEMA3DO95025 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC16.49■□□□□ 0.23
SEMA3DO95025 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SEMA3DO95025 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SEMA3DO95025 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC16.49■□□□□ 0.23
SEMA3DO95025 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC16.49■□□□□ 0.23
SEMA3DO95025 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC16.48■□□□□ 0.23
SEMA3DO95025 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SEMA3DO95025 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC16.48■□□□□ 0.23
SEMA3DO95025 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
SEMA3DO95025 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms