Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PCDHGA1Q9Y5H4 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCDHGA1Q9Y5H4 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
PCDHGA1Q9Y5H4 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCDHGA1Q9Y5H4 AC007613.1-201ENST00000572811 2597 ntBASIC16.48■□□□□ 0.23
PCDHGA1Q9Y5H4 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PCDHGA1Q9Y5H4 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCDHGA1Q9Y5H4 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCDHGA1Q9Y5H4 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
PCDHGA1Q9Y5H4 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCDHGA1Q9Y5H4 AC236430.1-201ENST00000402231 743 ntBASIC16.48■□□□□ 0.23
PCDHGA1Q9Y5H4 SPDYE7P-202ENST00000420373 878 ntBASIC16.48■□□□□ 0.23
PCDHGA1Q9Y5H4 HNRNPA1P40-201ENST00000426371 1278 ntBASIC16.48■□□□□ 0.23
PCDHGA1Q9Y5H4 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCDHGA1Q9Y5H4 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCDHGA1Q9Y5H4 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC16.48■□□□□ 0.23
PCDHGA1Q9Y5H4 TSPY16P-201ENST00000449843 468 ntBASIC16.48■□□□□ 0.23
PCDHGA1Q9Y5H4 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
PCDHGA1Q9Y5H4 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCDHGA1Q9Y5H4 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC16.48■□□□□ 0.23
PCDHGA1Q9Y5H4 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PCDHGA1Q9Y5H4 KRT8P23-201ENST00000560090 1207 ntBASIC16.48■□□□□ 0.23
PCDHGA1Q9Y5H4 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC16.48■□□□□ 0.23
PCDHGA1Q9Y5H4 AL135744.1-201ENST00000565098 629 ntBASIC16.48■□□□□ 0.23
PCDHGA1Q9Y5H4 AC140878.1-201ENST00000565277 250 ntBASIC16.48■□□□□ 0.23
PCDHGA1Q9Y5H4 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PCDHGA1Q9Y5H4 MIR4515-201ENST00000584082 81 ntBASIC16.48■□□□□ 0.23
PCDHGA1Q9Y5H4 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC16.48■□□□□ 0.23
PCDHGA1Q9Y5H4 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC16.48■□□□□ 0.23
PCDHGA1Q9Y5H4 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC16.48■□□□□ 0.23
PCDHGA1Q9Y5H4 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCDHGA1Q9Y5H4 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
PCDHGA1Q9Y5H4 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC16.48■□□□□ 0.23
PCDHGA1Q9Y5H4 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC16.48■□□□□ 0.23
PCDHGA1Q9Y5H4 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCDHGA1Q9Y5H4 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCDHGA1Q9Y5H4 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC16.48■□□□□ 0.23
PCDHGA1Q9Y5H4 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCDHGA1Q9Y5H4 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PCDHGA1Q9Y5H4 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCDHGA1Q9Y5H4 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC16.48■□□□□ 0.23
PCDHGA1Q9Y5H4 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDHGA1Q9Y5H4 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDHGA1Q9Y5H4 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDHGA1Q9Y5H4 AMT-250ENST00000637682 1823 ntTSL 5 BASIC16.47■□□□□ 0.23
PCDHGA1Q9Y5H4 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDHGA1Q9Y5H4 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDHGA1Q9Y5H4 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDHGA1Q9Y5H4 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDHGA1Q9Y5H4 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDHGA1Q9Y5H4 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDHGA1Q9Y5H4 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC16.47■□□□□ 0.23
PCDHGA1Q9Y5H4 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PCDHGA1Q9Y5H4 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC16.47■□□□□ 0.23
PCDHGA1Q9Y5H4 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC16.47■□□□□ 0.23
PCDHGA1Q9Y5H4 FAM58DP-201ENST00000428076 619 ntBASIC16.47■□□□□ 0.23
PCDHGA1Q9Y5H4 AC125807.1-201ENST00000483097 614 ntBASIC16.47■□□□□ 0.23
PCDHGA1Q9Y5H4 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
PCDHGA1Q9Y5H4 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC16.47■□□□□ 0.23
PCDHGA1Q9Y5H4 RN7SL204P-201ENST00000582831 262 ntBASIC16.47■□□□□ 0.23
PCDHGA1Q9Y5H4 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDHGA1Q9Y5H4 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC16.47■□□□□ 0.23
PCDHGA1Q9Y5H4 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC16.47■□□□□ 0.23
PCDHGA1Q9Y5H4 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
PCDHGA1Q9Y5H4 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
PCDHGA1Q9Y5H4 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDHGA1Q9Y5H4 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDHGA1Q9Y5H4 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC16.47■□□□□ 0.23
PCDHGA1Q9Y5H4 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PCDHGA1Q9Y5H4 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC16.47■□□□□ 0.23
PCDHGA1Q9Y5H4 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC16.47■□□□□ 0.23
PCDHGA1Q9Y5H4 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDHGA1Q9Y5H4 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
PCDHGA1Q9Y5H4 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDHGA1Q9Y5H4 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PCDHGA1Q9Y5H4 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PCDHGA1Q9Y5H4 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PCDHGA1Q9Y5H4 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC16.46■□□□□ 0.23
PCDHGA1Q9Y5H4 HARS-203ENST00000431330 1774 ntTSL 2 BASIC16.46■□□□□ 0.23
PCDHGA1Q9Y5H4 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PCDHGA1Q9Y5H4 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
PCDHGA1Q9Y5H4 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PCDHGA1Q9Y5H4 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PCDHGA1Q9Y5H4 BAD-202ENST00000394531 631 ntTSL 3 BASIC16.46■□□□□ 0.23
PCDHGA1Q9Y5H4 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
PCDHGA1Q9Y5H4 GPS2P2-201ENST00000430745 888 ntBASIC16.46■□□□□ 0.23
PCDHGA1Q9Y5H4 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC16.46■□□□□ 0.23
PCDHGA1Q9Y5H4 IGHV3-62-201ENST00000520057 340 ntBASIC16.46■□□□□ 0.23
PCDHGA1Q9Y5H4 BAD-207ENST00000544785 525 ntTSL 3 BASIC16.46■□□□□ 0.23
PCDHGA1Q9Y5H4 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC16.46■□□□□ 0.23
PCDHGA1Q9Y5H4 INO80E-210ENST00000567705 880 ntTSL 3 BASIC16.46■□□□□ 0.23
PCDHGA1Q9Y5H4 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC16.46■□□□□ 0.23
PCDHGA1Q9Y5H4 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC16.46■□□□□ 0.23
PCDHGA1Q9Y5H4 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
PCDHGA1Q9Y5H4 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PCDHGA1Q9Y5H4 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PCDHGA1Q9Y5H4 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC16.46■□□□□ 0.23
PCDHGA1Q9Y5H4 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC16.46■□□□□ 0.23
PCDHGA1Q9Y5H4 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PCDHGA1Q9Y5H4 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms