Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PCDHGA3Q9Y5H0 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC16.79■□□□□ 0.28
PCDHGA3Q9Y5H0 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PCDHGA3Q9Y5H0 FIS1-203ENST00000442303 631 ntTSL 3 BASIC16.79■□□□□ 0.28
PCDHGA3Q9Y5H0 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
PCDHGA3Q9Y5H0 AC136632.2-201ENST00000512891 861 ntBASIC16.79■□□□□ 0.28
PCDHGA3Q9Y5H0 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC16.79■□□□□ 0.28
PCDHGA3Q9Y5H0 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PCDHGA3Q9Y5H0 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC16.79■□□□□ 0.28
PCDHGA3Q9Y5H0 AC002347.1-201ENST00000569543 541 ntBASIC16.79■□□□□ 0.28
PCDHGA3Q9Y5H0 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC16.79■□□□□ 0.28
PCDHGA3Q9Y5H0 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
PCDHGA3Q9Y5H0 AC010327.4-202ENST00000591484 748 ntBASIC16.79■□□□□ 0.28
PCDHGA3Q9Y5H0 AL589182.2-201ENST00000619332 1049 ntBASIC16.79■□□□□ 0.28
PCDHGA3Q9Y5H0 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC16.79■□□□□ 0.28
PCDHGA3Q9Y5H0 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC16.79■□□□□ 0.28
PCDHGA3Q9Y5H0 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC16.79■□□□□ 0.28
PCDHGA3Q9Y5H0 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC16.79■□□□□ 0.28
PCDHGA3Q9Y5H0 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCDHGA3Q9Y5H0 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCDHGA3Q9Y5H0 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PCDHGA3Q9Y5H0 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC16.79■□□□□ 0.28
PCDHGA3Q9Y5H0 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PCDHGA3Q9Y5H0 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCDHGA3Q9Y5H0 MED29-202ENST00000594368 1471 ntTSL 2 BASIC16.79■□□□□ 0.28
PCDHGA3Q9Y5H0 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
PCDHGA3Q9Y5H0 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCDHGA3Q9Y5H0 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PCDHGA3Q9Y5H0 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCDHGA3Q9Y5H0 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC16.79■□□□□ 0.28
PCDHGA3Q9Y5H0 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC16.79■□□□□ 0.28
PCDHGA3Q9Y5H0 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCDHGA3Q9Y5H0 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCDHGA3Q9Y5H0 KRT8P47-201ENST00000604727 1398 ntBASIC16.78■□□□□ 0.28
PCDHGA3Q9Y5H0 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC16.78■□□□□ 0.28
PCDHGA3Q9Y5H0 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
PCDHGA3Q9Y5H0 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PCDHGA3Q9Y5H0 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PCDHGA3Q9Y5H0 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC16.78■□□□□ 0.28
PCDHGA3Q9Y5H0 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC16.78■□□□□ 0.28
PCDHGA3Q9Y5H0 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PCDHGA3Q9Y5H0 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PCDHGA3Q9Y5H0 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PCDHGA3Q9Y5H0 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC16.78■□□□□ 0.28
PCDHGA3Q9Y5H0 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC16.78■□□□□ 0.28
PCDHGA3Q9Y5H0 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC16.78■□□□□ 0.28
PCDHGA3Q9Y5H0 SLC4A1APP2-201ENST00000424054 1259 ntBASIC16.78■□□□□ 0.28
PCDHGA3Q9Y5H0 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC16.78■□□□□ 0.28
PCDHGA3Q9Y5H0 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC16.78■□□□□ 0.28
PCDHGA3Q9Y5H0 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC16.78■□□□□ 0.28
PCDHGA3Q9Y5H0 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC16.78■□□□□ 0.28
PCDHGA3Q9Y5H0 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC16.78■□□□□ 0.28
PCDHGA3Q9Y5H0 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PCDHGA3Q9Y5H0 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
PCDHGA3Q9Y5H0 SDCCAG3P1-201ENST00000589292 1150 ntBASIC16.78■□□□□ 0.28
PCDHGA3Q9Y5H0 AC079781.4-201ENST00000641908 219 ntBASIC16.78■□□□□ 0.28
PCDHGA3Q9Y5H0 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
PCDHGA3Q9Y5H0 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PCDHGA3Q9Y5H0 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PCDHGA3Q9Y5H0 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PCDHGA3Q9Y5H0 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PCDHGA3Q9Y5H0 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PCDHGA3Q9Y5H0 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PCDHGA3Q9Y5H0 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
PCDHGA3Q9Y5H0 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC16.78■□□□□ 0.28
PCDHGA3Q9Y5H0 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC16.77■□□□□ 0.28
PCDHGA3Q9Y5H0 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC16.77■□□□□ 0.28
PCDHGA3Q9Y5H0 AC138028.4-201ENST00000564984 1845 ntBASIC16.77■□□□□ 0.28
PCDHGA3Q9Y5H0 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
PCDHGA3Q9Y5H0 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PCDHGA3Q9Y5H0 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PCDHGA3Q9Y5H0 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PCDHGA3Q9Y5H0 AL596257.1-201ENST00000641463 2694 ntBASIC16.77■□□□□ 0.28
PCDHGA3Q9Y5H0 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PCDHGA3Q9Y5H0 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PCDHGA3Q9Y5H0 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
PCDHGA3Q9Y5H0 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PCDHGA3Q9Y5H0 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PCDHGA3Q9Y5H0 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
PCDHGA3Q9Y5H0 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC16.77■□□□□ 0.28
PCDHGA3Q9Y5H0 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
PCDHGA3Q9Y5H0 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
PCDHGA3Q9Y5H0 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
PCDHGA3Q9Y5H0 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PCDHGA3Q9Y5H0 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
PCDHGA3Q9Y5H0 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PCDHGA3Q9Y5H0 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC16.77■□□□□ 0.28
PCDHGA3Q9Y5H0 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PCDHGA3Q9Y5H0 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC16.77■□□□□ 0.28
PCDHGA3Q9Y5H0 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
PCDHGA3Q9Y5H0 HNRNPA1P28-201ENST00000424481 961 ntBASIC16.77■□□□□ 0.28
PCDHGA3Q9Y5H0 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC16.77■□□□□ 0.28
PCDHGA3Q9Y5H0 AC112482.1-201ENST00000492080 688 ntBASIC16.77■□□□□ 0.28
PCDHGA3Q9Y5H0 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
PCDHGA3Q9Y5H0 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC16.77■□□□□ 0.28
PCDHGA3Q9Y5H0 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC16.77■□□□□ 0.28
PCDHGA3Q9Y5H0 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC16.77■□□□□ 0.28
PCDHGA3Q9Y5H0 AC073592.5-201ENST00000624854 528 ntBASIC16.77■□□□□ 0.28
PCDHGA3Q9Y5H0 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC16.77■□□□□ 0.28
PCDHGA3Q9Y5H0 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 56.6 ms