Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA2Q9Y261 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA2Q9Y261 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA2Q9Y261 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC13.95□□□□□ -0.18
FOXA2Q9Y261 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA2Q9Y261 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
FOXA2Q9Y261 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA2Q9Y261 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA2Q9Y261 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA2Q9Y261 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA2Q9Y261 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA2Q9Y261 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA2Q9Y261 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA2Q9Y261 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA2Q9Y261 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA2Q9Y261 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
FOXA2Q9Y261 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
FOXA2Q9Y261 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC13.94□□□□□ -0.18
FOXA2Q9Y261 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC13.94□□□□□ -0.18
FOXA2Q9Y261 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC13.94□□□□□ -0.18
FOXA2Q9Y261 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
FOXA2Q9Y261 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC13.94□□□□□ -0.18
FOXA2Q9Y261 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA2Q9Y261 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
FOXA2Q9Y261 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA2Q9Y261 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA2Q9Y261 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA2Q9Y261 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC13.94□□□□□ -0.18
FOXA2Q9Y261 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA2Q9Y261 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA2Q9Y261 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC13.94□□□□□ -0.18
FOXA2Q9Y261 AC091607.1-201ENST00000490318 1060 ntBASIC13.94□□□□□ -0.18
FOXA2Q9Y261 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC13.94□□□□□ -0.18
FOXA2Q9Y261 AC096582.2-201ENST00000510860 516 ntBASIC13.94□□□□□ -0.18
FOXA2Q9Y261 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC13.94□□□□□ -0.18
FOXA2Q9Y261 PNN-202ENST00000553331 656 ntTSL 3 BASIC13.94□□□□□ -0.18
FOXA2Q9Y261 AC099336.1-202ENST00000602961 463 ntBASIC13.94□□□□□ -0.18
FOXA2Q9Y261 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC13.94□□□□□ -0.18
FOXA2Q9Y261 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
FOXA2Q9Y261 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
FOXA2Q9Y261 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC13.94□□□□□ -0.18
FOXA2Q9Y261 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA2Q9Y261 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC13.94□□□□□ -0.18
FOXA2Q9Y261 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
FOXA2Q9Y261 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA2Q9Y261 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA2Q9Y261 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC13.94□□□□□ -0.18
FOXA2Q9Y261 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA2Q9Y261 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA2Q9Y261 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA2Q9Y261 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA2Q9Y261 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
FOXA2Q9Y261 AC092053.1-201ENST00000605787 1936 ntBASIC13.94□□□□□ -0.18
FOXA2Q9Y261 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
FOXA2Q9Y261 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA2Q9Y261 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA2Q9Y261 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC13.93□□□□□ -0.18
FOXA2Q9Y261 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA2Q9Y261 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA2Q9Y261 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA2Q9Y261 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
FOXA2Q9Y261 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA2Q9Y261 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
FOXA2Q9Y261 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA2Q9Y261 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC13.93□□□□□ -0.18
FOXA2Q9Y261 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA2Q9Y261 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA2Q9Y261 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA2Q9Y261 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA2Q9Y261 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA2Q9Y261 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA2Q9Y261 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA2Q9Y261 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC13.93□□□□□ -0.18
FOXA2Q9Y261 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA2Q9Y261 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
FOXA2Q9Y261 AC103564.2-201ENST00000432853 1299 ntBASIC13.93□□□□□ -0.18
FOXA2Q9Y261 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA2Q9Y261 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
FOXA2Q9Y261 MEG3-211ENST00000452514 461 ntTSL 3 BASIC13.93□□□□□ -0.18
FOXA2Q9Y261 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA2Q9Y261 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA2Q9Y261 CDV3-207ENST00000508481 661 ntTSL 3 BASIC13.93□□□□□ -0.18
FOXA2Q9Y261 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA2Q9Y261 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC13.93□□□□□ -0.18
FOXA2Q9Y261 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC13.93□□□□□ -0.18
FOXA2Q9Y261 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC13.93□□□□□ -0.18
FOXA2Q9Y261 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC13.93□□□□□ -0.18
FOXA2Q9Y261 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC13.93□□□□□ -0.18
FOXA2Q9Y261 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA2Q9Y261 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC13.93□□□□□ -0.18
FOXA2Q9Y261 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA2Q9Y261 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA2Q9Y261 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA2Q9Y261 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA2Q9Y261 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA2Q9Y261 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA2Q9Y261 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC13.93□□□□□ -0.18
FOXA2Q9Y261 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
FOXA2Q9Y261 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA2Q9Y261 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 83.4 ms