Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 ARTN-206ENST00000472435 402 ntTSL 3 BASIC17.73■□□□□ 0.43
VPS28Q9UK41 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC17.73■□□□□ 0.43
VPS28Q9UK41 SLC25A1P1-201ENST00000528351 927 ntBASIC17.73■□□□□ 0.43
VPS28Q9UK41 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC17.73■□□□□ 0.43
VPS28Q9UK41 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS28Q9UK41 AL139424.1-201ENST00000607572 797 ntBASIC17.73■□□□□ 0.43
VPS28Q9UK41 NME4-212ENST00000621774 904 ntTSL 3 BASIC17.73■□□□□ 0.43
VPS28Q9UK41 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC17.73■□□□□ 0.43
VPS28Q9UK41 AC117500.6-201ENST00000624871 588 ntBASIC17.73■□□□□ 0.43
VPS28Q9UK41 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS28Q9UK41 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VPS28Q9UK41 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
VPS28Q9UK41 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC17.73■□□□□ 0.43
VPS28Q9UK41 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VPS28Q9UK41 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC17.73■□□□□ 0.43
VPS28Q9UK41 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
VPS28Q9UK41 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS28Q9UK41 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC17.73■□□□□ 0.43
VPS28Q9UK41 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VPS28Q9UK41 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS28Q9UK41 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VPS28Q9UK41 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS28Q9UK41 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC17.72■□□□□ 0.43
VPS28Q9UK41 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
VPS28Q9UK41 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
VPS28Q9UK41 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
VPS28Q9UK41 AC080080.1-201ENST00000625121 2420 ntBASIC17.72■□□□□ 0.43
VPS28Q9UK41 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC17.72■□□□□ 0.43
VPS28Q9UK41 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VPS28Q9UK41 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
VPS28Q9UK41 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VPS28Q9UK41 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC17.72■□□□□ 0.43
VPS28Q9UK41 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC17.72■□□□□ 0.43
VPS28Q9UK41 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC17.72■□□□□ 0.43
VPS28Q9UK41 AC006504.4-201ENST00000592118 1568 ntBASIC17.72■□□□□ 0.43
VPS28Q9UK41 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
VPS28Q9UK41 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC17.72■□□□□ 0.43
VPS28Q9UK41 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
VPS28Q9UK41 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC17.72■□□□□ 0.43
VPS28Q9UK41 AC073621.1-201ENST00000392730 636 ntBASIC17.72■□□□□ 0.43
VPS28Q9UK41 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC17.72■□□□□ 0.43
VPS28Q9UK41 RPL13AP23-201ENST00000480739 586 ntBASIC17.72■□□□□ 0.43
VPS28Q9UK41 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC17.72■□□□□ 0.43
VPS28Q9UK41 IGHV3-22-201ENST00000520721 359 ntBASIC17.72■□□□□ 0.43
VPS28Q9UK41 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC17.72■□□□□ 0.43
VPS28Q9UK41 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC17.72■□□□□ 0.43
VPS28Q9UK41 AC005593.1-201ENST00000624894 515 ntBASIC17.72■□□□□ 0.43
VPS28Q9UK41 AF228730.7-201ENST00000641842 219 ntBASIC17.72■□□□□ 0.43
VPS28Q9UK41 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
VPS28Q9UK41 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
VPS28Q9UK41 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC17.72■□□□□ 0.43
VPS28Q9UK41 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VPS28Q9UK41 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VPS28Q9UK41 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
VPS28Q9UK41 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
VPS28Q9UK41 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
VPS28Q9UK41 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VPS28Q9UK41 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC17.72■□□□□ 0.43
VPS28Q9UK41 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VPS28Q9UK41 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
VPS28Q9UK41 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VPS28Q9UK41 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC17.71■□□□□ 0.43
VPS28Q9UK41 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
VPS28Q9UK41 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VPS28Q9UK41 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC17.71■□□□□ 0.43
VPS28Q9UK41 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
VPS28Q9UK41 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC17.71■□□□□ 0.43
VPS28Q9UK41 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC17.71■□□□□ 0.43
VPS28Q9UK41 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC17.71■□□□□ 0.43
VPS28Q9UK41 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC17.71■□□□□ 0.43
VPS28Q9UK41 ACTG1P4-201ENST00000425123 1122 ntBASIC17.71■□□□□ 0.43
VPS28Q9UK41 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC17.71■□□□□ 0.43
VPS28Q9UK41 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
VPS28Q9UK41 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC17.71■□□□□ 0.43
VPS28Q9UK41 ETFA-208ENST00000559602 792 ntTSL 3 BASIC17.71■□□□□ 0.43
VPS28Q9UK41 PGM5P2-202ENST00000637225 1043 ntBASIC17.71■□□□□ 0.43
VPS28Q9UK41 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VPS28Q9UK41 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VPS28Q9UK41 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
VPS28Q9UK41 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC17.71■□□□□ 0.43
VPS28Q9UK41 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
VPS28Q9UK41 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC17.71■□□□□ 0.43
VPS28Q9UK41 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VPS28Q9UK41 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC17.71■□□□□ 0.43
VPS28Q9UK41 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.42
VPS28Q9UK41 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.71■□□□□ 0.42
VPS28Q9UK41 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.42
VPS28Q9UK41 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
VPS28Q9UK41 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VPS28Q9UK41 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VPS28Q9UK41 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC17.7■□□□□ 0.42
VPS28Q9UK41 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
VPS28Q9UK41 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC17.7■□□□□ 0.42
VPS28Q9UK41 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC17.7■□□□□ 0.42
VPS28Q9UK41 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VPS28Q9UK41 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC17.7■□□□□ 0.42
VPS28Q9UK41 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC17.7■□□□□ 0.42
VPS28Q9UK41 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.42
VPS28Q9UK41 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC17.7■□□□□ 0.42
VPS28Q9UK41 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC17.7■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 110 ms