Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VPS13AQ96RL7 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VPS13AQ96RL7 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC16.82■□□□□ 0.28
VPS13AQ96RL7 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC16.81■□□□□ 0.28
VPS13AQ96RL7 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC16.81■□□□□ 0.28
VPS13AQ96RL7 CTBP2P3-201ENST00000585629 1255 ntBASIC16.81■□□□□ 0.28
VPS13AQ96RL7 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VPS13AQ96RL7 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC16.81■□□□□ 0.28
VPS13AQ96RL7 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VPS13AQ96RL7 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS13AQ96RL7 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS13AQ96RL7 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS13AQ96RL7 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC16.81■□□□□ 0.28
VPS13AQ96RL7 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS13AQ96RL7 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS13AQ96RL7 BTBD7P1-201ENST00000447253 1453 ntBASIC16.81■□□□□ 0.28
VPS13AQ96RL7 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC16.81■□□□□ 0.28
VPS13AQ96RL7 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS13AQ96RL7 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
VPS13AQ96RL7 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VPS13AQ96RL7 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC16.81■□□□□ 0.28
VPS13AQ96RL7 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC16.81■□□□□ 0.28
VPS13AQ96RL7 AC020907.1-201ENST00000616460 1350 ntBASIC16.81■□□□□ 0.28
VPS13AQ96RL7 FST-202ENST00000396947 2538 ntTSL 5 BASIC16.81■□□□□ 0.28
VPS13AQ96RL7 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS13AQ96RL7 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC16.81■□□□□ 0.28
VPS13AQ96RL7 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VPS13AQ96RL7 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS13AQ96RL7 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC16.81■□□□□ 0.28
VPS13AQ96RL7 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
VPS13AQ96RL7 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS13AQ96RL7 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
VPS13AQ96RL7 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS13AQ96RL7 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC16.8■□□□□ 0.28
VPS13AQ96RL7 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS13AQ96RL7 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS13AQ96RL7 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VPS13AQ96RL7 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VPS13AQ96RL7 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS13AQ96RL7 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC16.8■□□□□ 0.28
VPS13AQ96RL7 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC16.8■□□□□ 0.28
VPS13AQ96RL7 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
VPS13AQ96RL7 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC16.8■□□□□ 0.28
VPS13AQ96RL7 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
VPS13AQ96RL7 SATB1-217ENST00000493952 626 ntTSL 3 BASIC16.8■□□□□ 0.28
VPS13AQ96RL7 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS13AQ96RL7 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS13AQ96RL7 ORC6-206ENST00000568364 888 ntTSL 5 BASIC16.8■□□□□ 0.28
VPS13AQ96RL7 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC16.8■□□□□ 0.28
VPS13AQ96RL7 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC16.8■□□□□ 0.28
VPS13AQ96RL7 CROCCP3-202ENST00000420820 1947 ntBASIC16.8■□□□□ 0.28
VPS13AQ96RL7 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
VPS13AQ96RL7 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS13AQ96RL7 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS13AQ96RL7 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC16.8■□□□□ 0.28
VPS13AQ96RL7 TPI1-206ENST00000488464 791 ntTSL 5 BASIC16.8■□□□□ 0.28
VPS13AQ96RL7 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC16.8■□□□□ 0.28
VPS13AQ96RL7 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC16.8■□□□□ 0.28
VPS13AQ96RL7 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS13AQ96RL7 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS13AQ96RL7 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS13AQ96RL7 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS13AQ96RL7 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS13AQ96RL7 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS13AQ96RL7 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VPS13AQ96RL7 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS13AQ96RL7 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VPS13AQ96RL7 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VPS13AQ96RL7 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
VPS13AQ96RL7 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VPS13AQ96RL7 AC098614.1-201ENST00000368528 745 ntBASIC16.79■□□□□ 0.28
VPS13AQ96RL7 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
VPS13AQ96RL7 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC16.79■□□□□ 0.28
VPS13AQ96RL7 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC16.79■□□□□ 0.28
VPS13AQ96RL7 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
VPS13AQ96RL7 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
VPS13AQ96RL7 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
VPS13AQ96RL7 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
VPS13AQ96RL7 AL138918.1-201ENST00000568306 659 ntBASIC16.79■□□□□ 0.28
VPS13AQ96RL7 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
VPS13AQ96RL7 AL512343.1-201ENST00000605837 169 ntBASIC16.79■□□□□ 0.28
VPS13AQ96RL7 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VPS13AQ96RL7 FOXO1B-201ENST00000504678 1527 ntBASIC16.79■□□□□ 0.28
VPS13AQ96RL7 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VPS13AQ96RL7 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VPS13AQ96RL7 HNRNPA3P1-201ENST00000401429 1139 ntBASIC16.79■□□□□ 0.28
VPS13AQ96RL7 HNRNPA3P5-201ENST00000455201 833 ntBASIC16.79■□□□□ 0.28
VPS13AQ96RL7 AC007967.4-201ENST00000614700 386 ntBASIC16.79■□□□□ 0.28
VPS13AQ96RL7 PFAS-212ENST00000625942 396 ntTSL 5 BASIC16.79■□□□□ 0.28
VPS13AQ96RL7 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VPS13AQ96RL7 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
VPS13AQ96RL7 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC16.79■□□□□ 0.28
VPS13AQ96RL7 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
VPS13AQ96RL7 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
VPS13AQ96RL7 USP49-202ENST00000373010 2446 ntTSL 5 BASIC16.79■□□□□ 0.28
VPS13AQ96RL7 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC16.79■□□□□ 0.28
VPS13AQ96RL7 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
VPS13AQ96RL7 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC16.79■□□□□ 0.28
VPS13AQ96RL7 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VPS13AQ96RL7 TTTY23B-201ENST00000442790 549 ntBASIC16.79■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms