Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VPS39Q96JC1 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VPS39Q96JC1 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC17.29■□□□□ 0.36
VPS39Q96JC1 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VPS39Q96JC1 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC17.29■□□□□ 0.36
VPS39Q96JC1 AC091607.1-201ENST00000490318 1060 ntBASIC17.29■□□□□ 0.36
VPS39Q96JC1 AC009533.2-201ENST00000543664 586 ntBASIC17.29■□□□□ 0.36
VPS39Q96JC1 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC17.29■□□□□ 0.36
VPS39Q96JC1 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC17.29■□□□□ 0.36
VPS39Q96JC1 FUT8-AS1-201ENST00000621019 1521 ntBASIC17.29■□□□□ 0.36
VPS39Q96JC1 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC17.29■□□□□ 0.36
VPS39Q96JC1 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VPS39Q96JC1 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC17.29■□□□□ 0.36
VPS39Q96JC1 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VPS39Q96JC1 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC17.29■□□□□ 0.36
VPS39Q96JC1 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC17.29■□□□□ 0.36
VPS39Q96JC1 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
VPS39Q96JC1 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VPS39Q96JC1 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
VPS39Q96JC1 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC17.29■□□□□ 0.36
VPS39Q96JC1 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VPS39Q96JC1 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
VPS39Q96JC1 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VPS39Q96JC1 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC17.28■□□□□ 0.36
VPS39Q96JC1 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC17.28■□□□□ 0.36
VPS39Q96JC1 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC17.28■□□□□ 0.36
VPS39Q96JC1 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VPS39Q96JC1 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VPS39Q96JC1 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VPS39Q96JC1 EGFEM1P-202ENST00000431685 1563 ntBASIC17.28■□□□□ 0.36
VPS39Q96JC1 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VPS39Q96JC1 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC17.28■□□□□ 0.36
VPS39Q96JC1 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC17.28■□□□□ 0.36
VPS39Q96JC1 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
VPS39Q96JC1 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC17.28■□□□□ 0.36
VPS39Q96JC1 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VPS39Q96JC1 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VPS39Q96JC1 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
VPS39Q96JC1 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VPS39Q96JC1 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC17.28■□□□□ 0.36
VPS39Q96JC1 AL031133.1-201ENST00000406807 723 ntBASIC17.28■□□□□ 0.36
VPS39Q96JC1 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC17.28■□□□□ 0.36
VPS39Q96JC1 CHCHD2P8-201ENST00000429873 447 ntBASIC17.28■□□□□ 0.36
VPS39Q96JC1 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC17.28■□□□□ 0.36
VPS39Q96JC1 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
VPS39Q96JC1 KRT18P21-201ENST00000515767 1272 ntBASIC17.28■□□□□ 0.36
VPS39Q96JC1 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC17.28■□□□□ 0.36
VPS39Q96JC1 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VPS39Q96JC1 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC17.28■□□□□ 0.36
VPS39Q96JC1 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VPS39Q96JC1 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC17.28■□□□□ 0.36
VPS39Q96JC1 OS9-205ENST00000413095 1660 ntTSL 2 BASIC17.28■□□□□ 0.36
VPS39Q96JC1 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VPS39Q96JC1 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VPS39Q96JC1 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VPS39Q96JC1 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VPS39Q96JC1 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC17.28■□□□□ 0.36
VPS39Q96JC1 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC17.28■□□□□ 0.36
VPS39Q96JC1 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC17.28■□□□□ 0.36
VPS39Q96JC1 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
VPS39Q96JC1 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VPS39Q96JC1 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VPS39Q96JC1 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VPS39Q96JC1 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC17.28■□□□□ 0.36
VPS39Q96JC1 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
VPS39Q96JC1 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
VPS39Q96JC1 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
VPS39Q96JC1 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
VPS39Q96JC1 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC17.27■□□□□ 0.36
VPS39Q96JC1 PCDHA14-201ENST00000506751 2298 ntBASIC17.27■□□□□ 0.36
VPS39Q96JC1 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
VPS39Q96JC1 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC17.27■□□□□ 0.36
VPS39Q96JC1 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC17.27■□□□□ 0.36
VPS39Q96JC1 CD9-202ENST00000382515 1229 ntTSL 5 BASIC17.27■□□□□ 0.36
VPS39Q96JC1 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC17.27■□□□□ 0.36
VPS39Q96JC1 AC124947.2-201ENST00000547118 1133 ntBASIC17.27■□□□□ 0.36
VPS39Q96JC1 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC17.27■□□□□ 0.36
VPS39Q96JC1 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
VPS39Q96JC1 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
VPS39Q96JC1 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
VPS39Q96JC1 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VPS39Q96JC1 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
VPS39Q96JC1 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
VPS39Q96JC1 AC009336.1-201ENST00000608941 1553 ntBASIC17.27■□□□□ 0.35
VPS39Q96JC1 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
VPS39Q96JC1 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
VPS39Q96JC1 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
VPS39Q96JC1 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.35
VPS39Q96JC1 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.35
VPS39Q96JC1 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
VPS39Q96JC1 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
VPS39Q96JC1 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
VPS39Q96JC1 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS39Q96JC1 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
VPS39Q96JC1 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS39Q96JC1 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC17.26■□□□□ 0.35
VPS39Q96JC1 AC092068.3-201ENST00000587894 2016 ntBASIC17.26■□□□□ 0.35
VPS39Q96JC1 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
VPS39Q96JC1 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
VPS39Q96JC1 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms