Protein–RNA interactions for Protein: Q96JB5

CDK5RAP3, CDK5 regulatory subunit-associated protein 3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3Q96JB5 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CDK5RAP3Q96JB5 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CDK5RAP3Q96JB5 BX005266.1-201ENST00000473402 457 ntBASIC19.44■□□□□ 0.7
CDK5RAP3Q96JB5 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CDK5RAP3Q96JB5 TBCB-205ENST00000585746 875 ntTSL 3 BASIC19.44■□□□□ 0.7
CDK5RAP3Q96JB5 REXO1L6P-202ENST00000619970 1078 ntBASIC19.44■□□□□ 0.7
CDK5RAP3Q96JB5 AL139288.1-201ENST00000623748 933 ntBASIC19.44■□□□□ 0.7
CDK5RAP3Q96JB5 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
CDK5RAP3Q96JB5 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
CDK5RAP3Q96JB5 AL356309.3-201ENST00000624132 1934 ntBASIC19.44■□□□□ 0.7
CDK5RAP3Q96JB5 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC19.44■□□□□ 0.7
CDK5RAP3Q96JB5 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CDK5RAP3Q96JB5 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC19.44■□□□□ 0.7
CDK5RAP3Q96JB5 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
CDK5RAP3Q96JB5 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CDK5RAP3Q96JB5 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC19.44■□□□□ 0.7
CDK5RAP3Q96JB5 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
CDK5RAP3Q96JB5 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC19.44■□□□□ 0.7
CDK5RAP3Q96JB5 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CDK5RAP3Q96JB5 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
CDK5RAP3Q96JB5 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC19.43■□□□□ 0.7
CDK5RAP3Q96JB5 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
CDK5RAP3Q96JB5 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDK5RAP3Q96JB5 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDK5RAP3Q96JB5 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDK5RAP3Q96JB5 AC097637.2-201ENST00000624096 1997 ntBASIC19.43■□□□□ 0.7
CDK5RAP3Q96JB5 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC19.43■□□□□ 0.7
CDK5RAP3Q96JB5 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDK5RAP3Q96JB5 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC19.43■□□□□ 0.7
CDK5RAP3Q96JB5 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC19.43■□□□□ 0.7
CDK5RAP3Q96JB5 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDK5RAP3Q96JB5 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDK5RAP3Q96JB5 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDK5RAP3Q96JB5 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CDK5RAP3Q96JB5 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
CDK5RAP3Q96JB5 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
CDK5RAP3Q96JB5 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC19.43■□□□□ 0.7
CDK5RAP3Q96JB5 SAPCD2P3-201ENST00000455031 850 ntBASIC19.43■□□□□ 0.7
CDK5RAP3Q96JB5 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC19.43■□□□□ 0.7
CDK5RAP3Q96JB5 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
CDK5RAP3Q96JB5 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
CDK5RAP3Q96JB5 AL355877.3-201ENST00000622820 899 ntBASIC19.43■□□□□ 0.7
CDK5RAP3Q96JB5 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDK5RAP3Q96JB5 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDK5RAP3Q96JB5 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC19.43■□□□□ 0.7
CDK5RAP3Q96JB5 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC19.43■□□□□ 0.7
CDK5RAP3Q96JB5 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC19.43■□□□□ 0.7
CDK5RAP3Q96JB5 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDK5RAP3Q96JB5 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDK5RAP3Q96JB5 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
CDK5RAP3Q96JB5 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDK5RAP3Q96JB5 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CDK5RAP3Q96JB5 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC19.42■□□□□ 0.7
CDK5RAP3Q96JB5 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CDK5RAP3Q96JB5 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CDK5RAP3Q96JB5 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC19.42■□□□□ 0.7
CDK5RAP3Q96JB5 AC004817.3-201ENST00000602957 2129 ntBASIC19.42■□□□□ 0.7
CDK5RAP3Q96JB5 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC19.42■□□□□ 0.7
CDK5RAP3Q96JB5 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
CDK5RAP3Q96JB5 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CDK5RAP3Q96JB5 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CDK5RAP3Q96JB5 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC19.42■□□□□ 0.7
CDK5RAP3Q96JB5 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
CDK5RAP3Q96JB5 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CDK5RAP3Q96JB5 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CDK5RAP3Q96JB5 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC19.42■□□□□ 0.7
CDK5RAP3Q96JB5 IRF8-202ENST00000562492 946 ntTSL 3 BASIC19.42■□□□□ 0.7
CDK5RAP3Q96JB5 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC19.42■□□□□ 0.7
CDK5RAP3Q96JB5 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
CDK5RAP3Q96JB5 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC19.42■□□□□ 0.7
CDK5RAP3Q96JB5 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC19.42■□□□□ 0.7
CDK5RAP3Q96JB5 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC19.42■□□□□ 0.7
CDK5RAP3Q96JB5 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
CDK5RAP3Q96JB5 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC19.42■□□□□ 0.7
CDK5RAP3Q96JB5 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
CDK5RAP3Q96JB5 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CDK5RAP3Q96JB5 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CDK5RAP3Q96JB5 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC19.42■□□□□ 0.7
CDK5RAP3Q96JB5 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC19.42■□□□□ 0.7
CDK5RAP3Q96JB5 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC19.42■□□□□ 0.7
CDK5RAP3Q96JB5 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CDK5RAP3Q96JB5 PAN3-AS1-201ENST00000563843 1351 ntBASIC19.42■□□□□ 0.7
CDK5RAP3Q96JB5 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CDK5RAP3Q96JB5 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC19.42■□□□□ 0.7
CDK5RAP3Q96JB5 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CDK5RAP3Q96JB5 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CDK5RAP3Q96JB5 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CDK5RAP3Q96JB5 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CDK5RAP3Q96JB5 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CDK5RAP3Q96JB5 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CDK5RAP3Q96JB5 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CDK5RAP3Q96JB5 STK24-203ENST00000397517 4578 ntTSL 2 BASIC19.41■□□□□ 0.7
CDK5RAP3Q96JB5 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CDK5RAP3Q96JB5 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CDK5RAP3Q96JB5 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC19.41■□□□□ 0.7
CDK5RAP3Q96JB5 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CDK5RAP3Q96JB5 SCARNA2-201ENST00000458748 420 ntBASIC19.41■□□□□ 0.7
CDK5RAP3Q96JB5 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC19.41■□□□□ 0.7
CDK5RAP3Q96JB5 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC19.41■□□□□ 0.7
CDK5RAP3Q96JB5 NKAPP1-205ENST00000585790 367 ntBASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms