Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC17.21■□□□□ 0.35
HMGB4Q8WW32 SPDYE9P-201ENST00000570642 692 ntBASIC17.21■□□□□ 0.35
HMGB4Q8WW32 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
HMGB4Q8WW32 AC026120.1-201ENST00000611536 926 ntBASIC17.21■□□□□ 0.35
HMGB4Q8WW32 SPDYE10P-202ENST00000612005 668 ntBASIC17.21■□□□□ 0.35
HMGB4Q8WW32 SPDYE8P-202ENST00000612377 668 ntBASIC17.21■□□□□ 0.35
HMGB4Q8WW32 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC17.21■□□□□ 0.35
HMGB4Q8WW32 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HMGB4Q8WW32 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC17.21■□□□□ 0.35
HMGB4Q8WW32 AC009113.1-201ENST00000570267 2443 ntBASIC17.21■□□□□ 0.35
HMGB4Q8WW32 AR-207ENST00000612010 3896 ntTSL 5 BASIC17.21■□□□□ 0.35
HMGB4Q8WW32 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HMGB4Q8WW32 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC17.21■□□□□ 0.35
HMGB4Q8WW32 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.34
HMGB4Q8WW32 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC17.2■□□□□ 0.34
HMGB4Q8WW32 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HMGB4Q8WW32 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HMGB4Q8WW32 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC17.2■□□□□ 0.34
HMGB4Q8WW32 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HMGB4Q8WW32 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
HMGB4Q8WW32 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC17.2■□□□□ 0.34
HMGB4Q8WW32 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC17.2■□□□□ 0.34
HMGB4Q8WW32 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
HMGB4Q8WW32 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HMGB4Q8WW32 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HMGB4Q8WW32 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC17.2■□□□□ 0.34
HMGB4Q8WW32 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HMGB4Q8WW32 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HMGB4Q8WW32 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC17.2■□□□□ 0.34
HMGB4Q8WW32 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC17.2■□□□□ 0.34
HMGB4Q8WW32 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC17.2■□□□□ 0.34
HMGB4Q8WW32 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
HMGB4Q8WW32 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HMGB4Q8WW32 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC17.2■□□□□ 0.34
HMGB4Q8WW32 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HMGB4Q8WW32 AL627223.1-201ENST00000416693 442 ntBASIC17.2■□□□□ 0.34
HMGB4Q8WW32 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
HMGB4Q8WW32 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC17.2■□□□□ 0.34
HMGB4Q8WW32 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC17.2■□□□□ 0.34
HMGB4Q8WW32 LHX6-205ENST00000464484 666 ntTSL 2 BASIC17.2■□□□□ 0.34
HMGB4Q8WW32 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
HMGB4Q8WW32 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HMGB4Q8WW32 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC17.2■□□□□ 0.34
HMGB4Q8WW32 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC17.2■□□□□ 0.34
HMGB4Q8WW32 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HMGB4Q8WW32 AL096865.1-201ENST00000606796 927 ntBASIC17.2■□□□□ 0.34
HMGB4Q8WW32 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
HMGB4Q8WW32 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC17.2■□□□□ 0.34
HMGB4Q8WW32 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HMGB4Q8WW32 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HMGB4Q8WW32 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HMGB4Q8WW32 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HMGB4Q8WW32 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HMGB4Q8WW32 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HMGB4Q8WW32 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC17.2■□□□□ 0.34
HMGB4Q8WW32 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HMGB4Q8WW32 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
HMGB4Q8WW32 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
HMGB4Q8WW32 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HMGB4Q8WW32 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HMGB4Q8WW32 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HMGB4Q8WW32 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC17.19■□□□□ 0.34
HMGB4Q8WW32 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HMGB4Q8WW32 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
HMGB4Q8WW32 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC17.19■□□□□ 0.34
HMGB4Q8WW32 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
HMGB4Q8WW32 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC17.19■□□□□ 0.34
HMGB4Q8WW32 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HMGB4Q8WW32 AC140658.5-201ENST00000438532 169 ntBASIC17.19■□□□□ 0.34
HMGB4Q8WW32 KRT8P48-201ENST00000515599 1220 ntBASIC17.19■□□□□ 0.34
HMGB4Q8WW32 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC17.19■□□□□ 0.34
HMGB4Q8WW32 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC17.19■□□□□ 0.34
HMGB4Q8WW32 FAM86C2P-203ENST00000528684 1004 ntBASIC17.19■□□□□ 0.34
HMGB4Q8WW32 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC17.19■□□□□ 0.34
HMGB4Q8WW32 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC17.19■□□□□ 0.34
HMGB4Q8WW32 AC093520.2-201ENST00000561830 333 ntBASIC17.19■□□□□ 0.34
HMGB4Q8WW32 AC099522.2-201ENST00000607001 744 ntBASIC17.19■□□□□ 0.34
HMGB4Q8WW32 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
HMGB4Q8WW32 LINC01451-201ENST00000623792 534 ntBASIC17.19■□□□□ 0.34
HMGB4Q8WW32 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
HMGB4Q8WW32 AL645728.2-201ENST00000641974 660 ntBASIC17.19■□□□□ 0.34
HMGB4Q8WW32 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HMGB4Q8WW32 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC17.19■□□□□ 0.34
HMGB4Q8WW32 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
HMGB4Q8WW32 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HMGB4Q8WW32 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HMGB4Q8WW32 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC17.19■□□□□ 0.34
HMGB4Q8WW32 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
HMGB4Q8WW32 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
HMGB4Q8WW32 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC17.19■□□□□ 0.34
HMGB4Q8WW32 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HMGB4Q8WW32 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC17.19■□□□□ 0.34
HMGB4Q8WW32 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
HMGB4Q8WW32 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
HMGB4Q8WW32 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC17.18■□□□□ 0.34
HMGB4Q8WW32 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
HMGB4Q8WW32 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HMGB4Q8WW32 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
HMGB4Q8WW32 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC17.18■□□□□ 0.34
HMGB4Q8WW32 HARS-203ENST00000431330 1774 ntTSL 2 BASIC17.18■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms