Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
CSMD3Q7Z407 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC11.83□□□□□ -0.52
CSMD3Q7Z407 AC016027.1-202ENST00000607927 1699 ntBASIC11.83□□□□□ -0.52
CSMD3Q7Z407 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
CSMD3Q7Z407 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC11.83□□□□□ -0.52
CSMD3Q7Z407 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
CSMD3Q7Z407 AC104794.3-201ENST00000566840 1248 ntBASIC11.83□□□□□ -0.52
CSMD3Q7Z407 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC11.83□□□□□ -0.52
CSMD3Q7Z407 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC11.83□□□□□ -0.52
CSMD3Q7Z407 STK4-201ENST00000372801 2038 ntTSL 2 BASIC11.83□□□□□ -0.52
CSMD3Q7Z407 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC11.82□□□□□ -0.52
CSMD3Q7Z407 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
CSMD3Q7Z407 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
CSMD3Q7Z407 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
CSMD3Q7Z407 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
CSMD3Q7Z407 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CSMD3Q7Z407 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC11.82□□□□□ -0.52
CSMD3Q7Z407 AC007541.1-201ENST00000570282 1469 ntBASIC11.82□□□□□ -0.52
CSMD3Q7Z407 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CSMD3Q7Z407 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
CSMD3Q7Z407 MIR658-201ENST00000385210 100 ntBASIC11.82□□□□□ -0.52
CSMD3Q7Z407 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
CSMD3Q7Z407 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CSMD3Q7Z407 FST-202ENST00000396947 2538 ntTSL 5 BASIC11.82□□□□□ -0.52
CSMD3Q7Z407 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
CSMD3Q7Z407 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
CSMD3Q7Z407 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CSMD3Q7Z407 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
CSMD3Q7Z407 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CSMD3Q7Z407 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
CSMD3Q7Z407 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC11.82□□□□□ -0.52
CSMD3Q7Z407 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
CSMD3Q7Z407 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
CSMD3Q7Z407 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC11.82□□□□□ -0.52
CSMD3Q7Z407 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC11.82□□□□□ -0.52
CSMD3Q7Z407 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
CSMD3Q7Z407 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC11.82□□□□□ -0.52
CSMD3Q7Z407 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CSMD3Q7Z407 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CSMD3Q7Z407 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CSMD3Q7Z407 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
CSMD3Q7Z407 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CSMD3Q7Z407 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
CSMD3Q7Z407 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
CSMD3Q7Z407 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
CSMD3Q7Z407 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CSMD3Q7Z407 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC11.82□□□□□ -0.52
CSMD3Q7Z407 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC11.82□□□□□ -0.52
CSMD3Q7Z407 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CSMD3Q7Z407 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
CSMD3Q7Z407 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
CSMD3Q7Z407 PTPA-220ENST00000436883 532 ntTSL 4 BASIC11.82□□□□□ -0.52
CSMD3Q7Z407 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC11.82□□□□□ -0.52
CSMD3Q7Z407 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
CSMD3Q7Z407 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
CSMD3Q7Z407 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC11.82□□□□□ -0.52
CSMD3Q7Z407 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CSMD3Q7Z407 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
CSMD3Q7Z407 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
CSMD3Q7Z407 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
CSMD3Q7Z407 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
CSMD3Q7Z407 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
CSMD3Q7Z407 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
CSMD3Q7Z407 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC11.81□□□□□ -0.52
CSMD3Q7Z407 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC11.81□□□□□ -0.52
CSMD3Q7Z407 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC11.81□□□□□ -0.52
CSMD3Q7Z407 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC11.81□□□□□ -0.52
CSMD3Q7Z407 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC11.81□□□□□ -0.52
CSMD3Q7Z407 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC11.81□□□□□ -0.52
CSMD3Q7Z407 NARF-206ENST00000457415 1668 ntTSL 5 BASIC11.81□□□□□ -0.52
CSMD3Q7Z407 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
CSMD3Q7Z407 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
CSMD3Q7Z407 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC11.81□□□□□ -0.52
CSMD3Q7Z407 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC11.81□□□□□ -0.52
CSMD3Q7Z407 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
CSMD3Q7Z407 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
CSMD3Q7Z407 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
CSMD3Q7Z407 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC11.81□□□□□ -0.52
CSMD3Q7Z407 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC11.81□□□□□ -0.52
CSMD3Q7Z407 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC11.81□□□□□ -0.52
CSMD3Q7Z407 IGHV3-42-201ENST00000520410 361 ntBASIC11.81□□□□□ -0.52
CSMD3Q7Z407 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC11.81□□□□□ -0.52
CSMD3Q7Z407 AC004233.3-201ENST00000607794 1269 ntBASIC11.81□□□□□ -0.52
CSMD3Q7Z407 TEX28P1-201ENST00000613479 1221 ntBASIC11.81□□□□□ -0.52
CSMD3Q7Z407 TEX28P2-201ENST00000617764 1221 ntBASIC11.81□□□□□ -0.52
CSMD3Q7Z407 AC008267.7-201ENST00000624570 1194 ntBASIC11.81□□□□□ -0.52
CSMD3Q7Z407 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC11.81□□□□□ -0.52
CSMD3Q7Z407 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
CSMD3Q7Z407 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC11.81□□□□□ -0.52
CSMD3Q7Z407 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC11.81□□□□□ -0.52
CSMD3Q7Z407 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC11.81□□□□□ -0.52
CSMD3Q7Z407 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC11.81□□□□□ -0.52
CSMD3Q7Z407 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
CSMD3Q7Z407 SLC22A20-204ENST00000530038 1673 ntBASIC11.81□□□□□ -0.52
CSMD3Q7Z407 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC11.81□□□□□ -0.52
CSMD3Q7Z407 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
CSMD3Q7Z407 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
CSMD3Q7Z407 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC11.81□□□□□ -0.52
CSMD3Q7Z407 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
CSMD3Q7Z407 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms