Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
RC3H1Q5TC82 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
RC3H1Q5TC82 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
RC3H1Q5TC82 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC21.43■■□□□ 1.02
RC3H1Q5TC82 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC21.43■■□□□ 1.02
RC3H1Q5TC82 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC21.43■■□□□ 1.02
RC3H1Q5TC82 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
RC3H1Q5TC82 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
RC3H1Q5TC82 AC007274.1-201ENST00000439805 662 ntBASIC21.43■■□□□ 1.02
RC3H1Q5TC82 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
RC3H1Q5TC82 HLA-V-204ENST00000476601 1289 ntBASIC21.43■■□□□ 1.02
RC3H1Q5TC82 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC21.43■■□□□ 1.02
RC3H1Q5TC82 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC21.43■■□□□ 1.02
RC3H1Q5TC82 MPDU1-223ENST00000582151 728 ntBASIC21.43■■□□□ 1.02
RC3H1Q5TC82 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC21.43■■□□□ 1.02
RC3H1Q5TC82 AL138828.2-201ENST00000615812 383 ntBASIC21.43■■□□□ 1.02
RC3H1Q5TC82 SPDYE12P-201ENST00000618416 771 ntBASIC21.43■■□□□ 1.02
RC3H1Q5TC82 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
RC3H1Q5TC82 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
RC3H1Q5TC82 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC21.43■■□□□ 1.02
RC3H1Q5TC82 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
RC3H1Q5TC82 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
RC3H1Q5TC82 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
RC3H1Q5TC82 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
RC3H1Q5TC82 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
RC3H1Q5TC82 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
RC3H1Q5TC82 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
RC3H1Q5TC82 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
RC3H1Q5TC82 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
RC3H1Q5TC82 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
RC3H1Q5TC82 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC21.42■■□□□ 1.02
RC3H1Q5TC82 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
RC3H1Q5TC82 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC21.42■■□□□ 1.02
RC3H1Q5TC82 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC21.42■■□□□ 1.02
RC3H1Q5TC82 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
RC3H1Q5TC82 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
RC3H1Q5TC82 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
RC3H1Q5TC82 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC21.42■■□□□ 1.02
RC3H1Q5TC82 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
RC3H1Q5TC82 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC21.42■■□□□ 1.02
RC3H1Q5TC82 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
RC3H1Q5TC82 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
RC3H1Q5TC82 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
RC3H1Q5TC82 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC21.41■■□□□ 1.02
RC3H1Q5TC82 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
RC3H1Q5TC82 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
RC3H1Q5TC82 AC131009.4-201ENST00000624048 1740 ntBASIC21.41■■□□□ 1.02
RC3H1Q5TC82 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC21.41■■□□□ 1.02
RC3H1Q5TC82 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
RC3H1Q5TC82 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
RC3H1Q5TC82 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC21.41■■□□□ 1.02
RC3H1Q5TC82 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC21.41■■□□□ 1.02
RC3H1Q5TC82 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
RC3H1Q5TC82 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
RC3H1Q5TC82 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC21.41■■□□□ 1.02
RC3H1Q5TC82 REEP4-207ENST00000523293 913 ntTSL 3 BASIC21.41■■□□□ 1.02
RC3H1Q5TC82 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC21.41■■□□□ 1.02
RC3H1Q5TC82 MPI-209ENST00000564003 1195 ntTSL 2 BASIC21.41■■□□□ 1.02
RC3H1Q5TC82 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC21.41■■□□□ 1.02
RC3H1Q5TC82 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC21.41■■□□□ 1.02
RC3H1Q5TC82 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
RC3H1Q5TC82 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
RC3H1Q5TC82 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC21.41■■□□□ 1.02
RC3H1Q5TC82 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC21.41■■□□□ 1.02
RC3H1Q5TC82 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
RC3H1Q5TC82 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
RC3H1Q5TC82 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
RC3H1Q5TC82 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC21.41■■□□□ 1.02
RC3H1Q5TC82 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
RC3H1Q5TC82 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
RC3H1Q5TC82 EGFEM1P-202ENST00000431685 1563 ntBASIC21.4■■□□□ 1.02
RC3H1Q5TC82 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC21.4■■□□□ 1.02
RC3H1Q5TC82 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC21.4■■□□□ 1.02
RC3H1Q5TC82 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
RC3H1Q5TC82 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
RC3H1Q5TC82 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
RC3H1Q5TC82 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC21.4■■□□□ 1.02
RC3H1Q5TC82 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC21.4■■□□□ 1.02
RC3H1Q5TC82 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
RC3H1Q5TC82 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
RC3H1Q5TC82 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC21.4■■□□□ 1.02
RC3H1Q5TC82 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
RC3H1Q5TC82 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
RC3H1Q5TC82 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
RC3H1Q5TC82 AC009477.1-201ENST00000452936 217 ntBASIC21.4■■□□□ 1.02
RC3H1Q5TC82 SATB1-217ENST00000493952 626 ntTSL 3 BASIC21.4■■□□□ 1.02
RC3H1Q5TC82 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC21.4■■□□□ 1.02
RC3H1Q5TC82 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC21.4■■□□□ 1.02
RC3H1Q5TC82 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
RC3H1Q5TC82 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC21.4■■□□□ 1.02
RC3H1Q5TC82 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
RC3H1Q5TC82 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC21.4■■□□□ 1.02
RC3H1Q5TC82 AC004233.3-201ENST00000607794 1269 ntBASIC21.4■■□□□ 1.02
RC3H1Q5TC82 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
RC3H1Q5TC82 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
RC3H1Q5TC82 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
RC3H1Q5TC82 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC21.4■■□□□ 1.02
RC3H1Q5TC82 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
RC3H1Q5TC82 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
RC3H1Q5TC82 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC21.4■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms