Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC17.5■□□□□ 0.39
USP39Q53GS9 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
USP39Q53GS9 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC17.5■□□□□ 0.39
USP39Q53GS9 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
USP39Q53GS9 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC17.5■□□□□ 0.39
USP39Q53GS9 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
USP39Q53GS9 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
USP39Q53GS9 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC17.5■□□□□ 0.39
USP39Q53GS9 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
USP39Q53GS9 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
USP39Q53GS9 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
USP39Q53GS9 NEK7-201ENST00000367383 586 ntTSL 2 BASIC17.5■□□□□ 0.39
USP39Q53GS9 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC17.5■□□□□ 0.39
USP39Q53GS9 IGLL3P-201ENST00000412472 434 ntBASIC17.5■□□□□ 0.39
USP39Q53GS9 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
USP39Q53GS9 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
USP39Q53GS9 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC17.5■□□□□ 0.39
USP39Q53GS9 AC109462.3-201ENST00000573934 613 ntBASIC17.5■□□□□ 0.39
USP39Q53GS9 TMED1-207ENST00000591695 809 ntTSL 5 BASIC17.5■□□□□ 0.39
USP39Q53GS9 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC17.5■□□□□ 0.39
USP39Q53GS9 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC17.5■□□□□ 0.39
USP39Q53GS9 AQP6-205ENST00000618286 829 ntTSL 5 BASIC17.5■□□□□ 0.39
USP39Q53GS9 AC007064.4-201ENST00000637740 555 ntBASIC17.5■□□□□ 0.39
USP39Q53GS9 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC17.5■□□□□ 0.39
USP39Q53GS9 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
USP39Q53GS9 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
USP39Q53GS9 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC17.5■□□□□ 0.39
USP39Q53GS9 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
USP39Q53GS9 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
USP39Q53GS9 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
USP39Q53GS9 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
USP39Q53GS9 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
USP39Q53GS9 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
USP39Q53GS9 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC17.49■□□□□ 0.39
USP39Q53GS9 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
USP39Q53GS9 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
USP39Q53GS9 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC17.49■□□□□ 0.39
USP39Q53GS9 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
USP39Q53GS9 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
USP39Q53GS9 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
USP39Q53GS9 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
USP39Q53GS9 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
USP39Q53GS9 HLA-DQB1-201ENST00000374943 1656 ntBASIC17.49■□□□□ 0.39
USP39Q53GS9 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC17.49■□□□□ 0.39
USP39Q53GS9 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
USP39Q53GS9 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
USP39Q53GS9 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
USP39Q53GS9 AP002414.1-201ENST00000391405 1147 ntBASIC17.49■□□□□ 0.39
USP39Q53GS9 PTCHD3P3-201ENST00000403073 906 ntBASIC17.49■□□□□ 0.39
USP39Q53GS9 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC17.49■□□□□ 0.39
USP39Q53GS9 AC074386.1-202ENST00000463561 864 ntBASIC17.49■□□□□ 0.39
USP39Q53GS9 AP000344.2-201ENST00000512987 629 ntBASIC17.49■□□□□ 0.39
USP39Q53GS9 PUS1-205ENST00000535067 838 ntTSL 3 BASIC17.49■□□□□ 0.39
USP39Q53GS9 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
USP39Q53GS9 KRT19P2-202ENST00000557173 1012 ntBASIC17.49■□□□□ 0.39
USP39Q53GS9 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC17.49■□□□□ 0.39
USP39Q53GS9 AL031432.2-201ENST00000566714 459 ntBASIC17.49■□□□□ 0.39
USP39Q53GS9 AL928711.1-201ENST00000570165 459 ntBASIC17.49■□□□□ 0.39
USP39Q53GS9 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC17.49■□□□□ 0.39
USP39Q53GS9 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC17.49■□□□□ 0.39
USP39Q53GS9 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
USP39Q53GS9 AC010507.1-201ENST00000633895 436 ntBASIC17.49■□□□□ 0.39
USP39Q53GS9 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
USP39Q53GS9 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
USP39Q53GS9 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC17.49■□□□□ 0.39
USP39Q53GS9 LTB4R2-202ENST00000528054 3092 ntBASIC17.49■□□□□ 0.39
USP39Q53GS9 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
USP39Q53GS9 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
USP39Q53GS9 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC17.49■□□□□ 0.39
USP39Q53GS9 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
USP39Q53GS9 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
USP39Q53GS9 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
USP39Q53GS9 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
USP39Q53GS9 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
USP39Q53GS9 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC17.49■□□□□ 0.39
USP39Q53GS9 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
USP39Q53GS9 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
USP39Q53GS9 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
USP39Q53GS9 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
USP39Q53GS9 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
USP39Q53GS9 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC17.48■□□□□ 0.39
USP39Q53GS9 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC17.48■□□□□ 0.39
USP39Q53GS9 AC097637.2-201ENST00000624096 1997 ntBASIC17.48■□□□□ 0.39
USP39Q53GS9 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
USP39Q53GS9 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC17.48■□□□□ 0.39
USP39Q53GS9 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
USP39Q53GS9 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
USP39Q53GS9 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC17.48■□□□□ 0.39
USP39Q53GS9 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC17.48■□□□□ 0.39
USP39Q53GS9 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC17.48■□□□□ 0.39
USP39Q53GS9 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
USP39Q53GS9 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
USP39Q53GS9 CIPC-205ENST00000555437 566 ntTSL 3 BASIC17.48■□□□□ 0.39
USP39Q53GS9 RIN3-211ENST00000557762 517 ntTSL 3 BASIC17.48■□□□□ 0.39
USP39Q53GS9 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC17.48■□□□□ 0.39
USP39Q53GS9 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC17.48■□□□□ 0.39
USP39Q53GS9 METTL23-205ENST00000588302 925 ntTSL 5 BASIC17.48■□□□□ 0.39
USP39Q53GS9 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
USP39Q53GS9 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC17.48■□□□□ 0.39
USP39Q53GS9 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC17.48■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms