Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC14.34□□□□□ -0.11
PDLIM3Q53GG5 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC14.34□□□□□ -0.11
PDLIM3Q53GG5 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
PDLIM3Q53GG5 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PDLIM3Q53GG5 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PDLIM3Q53GG5 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PDLIM3Q53GG5 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
PDLIM3Q53GG5 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC14.34□□□□□ -0.11
PDLIM3Q53GG5 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC14.34□□□□□ -0.11
PDLIM3Q53GG5 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC14.34□□□□□ -0.11
PDLIM3Q53GG5 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC14.34□□□□□ -0.11
PDLIM3Q53GG5 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PDLIM3Q53GG5 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
PDLIM3Q53GG5 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
PDLIM3Q53GG5 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PDLIM3Q53GG5 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC14.34□□□□□ -0.11
PDLIM3Q53GG5 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PDLIM3Q53GG5 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
PDLIM3Q53GG5 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PDLIM3Q53GG5 TLE1-202ENST00000376484 666 ntTSL 3 BASIC14.34□□□□□ -0.11
PDLIM3Q53GG5 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
PDLIM3Q53GG5 FABP5-202ENST00000396359 986 ntTSL 5 BASIC14.34□□□□□ -0.11
PDLIM3Q53GG5 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
PDLIM3Q53GG5 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC14.34□□□□□ -0.11
PDLIM3Q53GG5 HTR5BP-201ENST00000430851 1154 ntBASIC14.34□□□□□ -0.11
PDLIM3Q53GG5 DDX43P3-201ENST00000441064 443 ntBASIC14.34□□□□□ -0.11
PDLIM3Q53GG5 AC113404.2-201ENST00000507884 177 ntBASIC14.34□□□□□ -0.11
PDLIM3Q53GG5 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC14.34□□□□□ -0.11
PDLIM3Q53GG5 TPM1-218ENST00000559281 851 ntTSL 5 BASIC14.34□□□□□ -0.11
PDLIM3Q53GG5 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
PDLIM3Q53GG5 ABR-217ENST00000572441 563 ntTSL 4 BASIC14.34□□□□□ -0.11
PDLIM3Q53GG5 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PDLIM3Q53GG5 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC14.34□□□□□ -0.11
PDLIM3Q53GG5 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PDLIM3Q53GG5 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
PDLIM3Q53GG5 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC14.34□□□□□ -0.11
PDLIM3Q53GG5 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
PDLIM3Q53GG5 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
PDLIM3Q53GG5 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
PDLIM3Q53GG5 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
PDLIM3Q53GG5 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
PDLIM3Q53GG5 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC14.34□□□□□ -0.11
PDLIM3Q53GG5 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PDLIM3Q53GG5 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
PDLIM3Q53GG5 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC14.34□□□□□ -0.11
PDLIM3Q53GG5 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC14.34□□□□□ -0.11
PDLIM3Q53GG5 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
PDLIM3Q53GG5 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
PDLIM3Q53GG5 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PDLIM3Q53GG5 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC14.33□□□□□ -0.11
PDLIM3Q53GG5 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.11
PDLIM3Q53GG5 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
PDLIM3Q53GG5 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.11
PDLIM3Q53GG5 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
PDLIM3Q53GG5 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC14.33□□□□□ -0.11
PDLIM3Q53GG5 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
PDLIM3Q53GG5 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC14.33□□□□□ -0.11
PDLIM3Q53GG5 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
PDLIM3Q53GG5 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
PDLIM3Q53GG5 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
PDLIM3Q53GG5 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
PDLIM3Q53GG5 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC14.33□□□□□ -0.12
PDLIM3Q53GG5 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC14.33□□□□□ -0.12
PDLIM3Q53GG5 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC14.33□□□□□ -0.12
PDLIM3Q53GG5 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
PDLIM3Q53GG5 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC14.33□□□□□ -0.12
PDLIM3Q53GG5 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PDLIM3Q53GG5 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
PDLIM3Q53GG5 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PDLIM3Q53GG5 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
PDLIM3Q53GG5 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
PDLIM3Q53GG5 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PDLIM3Q53GG5 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC14.33□□□□□ -0.12
PDLIM3Q53GG5 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PDLIM3Q53GG5 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PDLIM3Q53GG5 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PDLIM3Q53GG5 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
PDLIM3Q53GG5 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PDLIM3Q53GG5 CHCHD2P8-201ENST00000429873 447 ntBASIC14.33□□□□□ -0.12
PDLIM3Q53GG5 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
PDLIM3Q53GG5 KRT16P4-201ENST00000453883 522 ntBASIC14.33□□□□□ -0.12
PDLIM3Q53GG5 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC14.33□□□□□ -0.12
PDLIM3Q53GG5 MPI-205ENST00000562606 1052 ntTSL 3 BASIC14.33□□□□□ -0.12
PDLIM3Q53GG5 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
PDLIM3Q53GG5 NT5C-210ENST00000582160 860 ntTSL 2 BASIC14.33□□□□□ -0.12
PDLIM3Q53GG5 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC14.33□□□□□ -0.12
PDLIM3Q53GG5 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC14.33□□□□□ -0.12
PDLIM3Q53GG5 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC14.33□□□□□ -0.12
PDLIM3Q53GG5 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
PDLIM3Q53GG5 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PDLIM3Q53GG5 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC14.33□□□□□ -0.12
PDLIM3Q53GG5 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC14.33□□□□□ -0.12
PDLIM3Q53GG5 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
PDLIM3Q53GG5 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
PDLIM3Q53GG5 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
PDLIM3Q53GG5 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
PDLIM3Q53GG5 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PDLIM3Q53GG5 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC14.33□□□□□ -0.12
PDLIM3Q53GG5 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
PDLIM3Q53GG5 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC14.33□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms