Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AC006435.4-201ENST00000625037 234 ntBASIC12.25□□□□□ -0.45
PRKDCP78527 AL356737.1-201ENST00000634391 234 ntBASIC12.25□□□□□ -0.45
PRKDCP78527 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
PRKDCP78527 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
PRKDCP78527 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
PRKDCP78527 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
PRKDCP78527 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
PRKDCP78527 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
PRKDCP78527 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
PRKDCP78527 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
PRKDCP78527 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
PRKDCP78527 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
PRKDCP78527 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC12.24□□□□□ -0.45
PRKDCP78527 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
PRKDCP78527 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
PRKDCP78527 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
PRKDCP78527 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
PRKDCP78527 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC12.24□□□□□ -0.45
PRKDCP78527 BX276092.7-203ENST00000637198 1536 ntBASIC12.24□□□□□ -0.45
PRKDCP78527 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC12.24□□□□□ -0.45
PRKDCP78527 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
PRKDCP78527 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
PRKDCP78527 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
PRKDCP78527 REXO1L11P-201ENST00000620964 1927 ntBASIC12.24□□□□□ -0.45
PRKDCP78527 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC12.24□□□□□ -0.45
PRKDCP78527 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
PRKDCP78527 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC12.24□□□□□ -0.45
PRKDCP78527 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
PRKDCP78527 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC12.24□□□□□ -0.45
PRKDCP78527 AL133215.2-201ENST00000609242 977 ntBASIC12.24□□□□□ -0.45
PRKDCP78527 TEX48-202ENST00000612244 662 ntTSL 3 BASIC12.24□□□□□ -0.45
PRKDCP78527 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
PRKDCP78527 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC12.24□□□□□ -0.45
PRKDCP78527 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
PRKDCP78527 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC12.24□□□□□ -0.45
PRKDCP78527 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
PRKDCP78527 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
PRKDCP78527 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC12.24□□□□□ -0.45
PRKDCP78527 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC12.24□□□□□ -0.45
PRKDCP78527 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC12.24□□□□□ -0.45
PRKDCP78527 ACTG1P17-201ENST00000558391 1119 ntBASIC12.24□□□□□ -0.45
PRKDCP78527 RN7SL219P-201ENST00000582872 296 ntBASIC12.24□□□□□ -0.45
PRKDCP78527 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC12.24□□□□□ -0.45
PRKDCP78527 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
PRKDCP78527 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC12.24□□□□□ -0.45
PRKDCP78527 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
PRKDCP78527 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
PRKDCP78527 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC12.23□□□□□ -0.45
PRKDCP78527 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC12.23□□□□□ -0.45
PRKDCP78527 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
PRKDCP78527 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC12.23□□□□□ -0.45
PRKDCP78527 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
PRKDCP78527 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
PRKDCP78527 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
PRKDCP78527 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
PRKDCP78527 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
PRKDCP78527 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
PRKDCP78527 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
PRKDCP78527 MPV17-206ENST00000402722 827 ntTSL 3 BASIC12.23□□□□□ -0.45
PRKDCP78527 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC12.23□□□□□ -0.45
PRKDCP78527 FAM86HP-204ENST00000513466 959 ntBASIC12.23□□□□□ -0.45
PRKDCP78527 FADS2-212ENST00000522639 360 ntTSL 5 BASIC12.23□□□□□ -0.45
PRKDCP78527 NEU3-203ENST00000529024 581 ntTSL 3 BASIC12.23□□□□□ -0.45
PRKDCP78527 FADS2-215ENST00000574708 385 ntTSL 3 BASIC12.23□□□□□ -0.45
PRKDCP78527 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC12.23□□□□□ -0.45
PRKDCP78527 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC12.23□□□□□ -0.45
PRKDCP78527 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC12.23□□□□□ -0.45
PRKDCP78527 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC12.23□□□□□ -0.45
PRKDCP78527 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC12.23□□□□□ -0.45
PRKDCP78527 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
PRKDCP78527 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
PRKDCP78527 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC12.23□□□□□ -0.45
PRKDCP78527 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
PRKDCP78527 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
PRKDCP78527 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
PRKDCP78527 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC12.23□□□□□ -0.45
PRKDCP78527 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC12.23□□□□□ -0.45
PRKDCP78527 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC12.23□□□□□ -0.45
PRKDCP78527 AC006033.1-201ENST00000440505 426 ntBASIC12.23□□□□□ -0.45
PRKDCP78527 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC12.23□□□□□ -0.45
PRKDCP78527 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC12.23□□□□□ -0.45
PRKDCP78527 RIT1-205ENST00000539040 919 ntTSL 2 BASIC12.23□□□□□ -0.45
PRKDCP78527 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
PRKDCP78527 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC12.23□□□□□ -0.45
PRKDCP78527 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC12.23□□□□□ -0.45
PRKDCP78527 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
PRKDCP78527 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
PRKDCP78527 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
PRKDCP78527 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
PRKDCP78527 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
PRKDCP78527 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC12.22□□□□□ -0.45
PRKDCP78527 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC12.22□□□□□ -0.45
PRKDCP78527 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
PRKDCP78527 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
PRKDCP78527 DERL2-202ENST00000570848 657 ntTSL 5 BASIC12.22□□□□□ -0.45
PRKDCP78527 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
PRKDCP78527 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC12.22□□□□□ -0.45
PRKDCP78527 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC12.22□□□□□ -0.45
PRKDCP78527 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
PRKDCP78527 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC12.22□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms