Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC19.34■□□□□ 0.69
TPM4P67936 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
TPM4P67936 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC19.34■□□□□ 0.69
TPM4P67936 AL596257.1-201ENST00000641463 2694 ntBASIC19.34■□□□□ 0.69
TPM4P67936 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC19.34■□□□□ 0.69
TPM4P67936 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
TPM4P67936 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
TPM4P67936 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
TPM4P67936 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
TPM4P67936 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
TPM4P67936 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TPM4P67936 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TPM4P67936 SLC25A1P3-201ENST00000395415 828 ntBASIC19.34■□□□□ 0.69
TPM4P67936 FAM8A6P-201ENST00000407496 1135 ntBASIC19.34■□□□□ 0.69
TPM4P67936 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC19.34■□□□□ 0.69
TPM4P67936 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC19.34■□□□□ 0.69
TPM4P67936 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
TPM4P67936 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
TPM4P67936 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC19.34■□□□□ 0.69
TPM4P67936 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TPM4P67936 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC19.34■□□□□ 0.69
TPM4P67936 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
TPM4P67936 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC19.34■□□□□ 0.69
TPM4P67936 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC19.34■□□□□ 0.69
TPM4P67936 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TPM4P67936 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
TPM4P67936 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
TPM4P67936 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
TPM4P67936 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
TPM4P67936 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
TPM4P67936 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
TPM4P67936 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
TPM4P67936 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
TPM4P67936 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
TPM4P67936 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC19.33■□□□□ 0.69
TPM4P67936 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
TPM4P67936 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
TPM4P67936 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
TPM4P67936 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
TPM4P67936 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
TPM4P67936 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
TPM4P67936 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
TPM4P67936 AC126755.1-201ENST00000525846 6405 ntBASIC19.33■□□□□ 0.69
TPM4P67936 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.69
TPM4P67936 MMP23A-201ENST00000234610 1017 ntBASIC19.33■□□□□ 0.68
TPM4P67936 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC19.33■□□□□ 0.68
TPM4P67936 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.68
TPM4P67936 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC19.33■□□□□ 0.68
TPM4P67936 AC141257.4-201ENST00000634557 245 ntBASIC19.33■□□□□ 0.68
TPM4P67936 AC136944.6-201ENST00000634818 245 ntBASIC19.33■□□□□ 0.68
TPM4P67936 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
TPM4P67936 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
TPM4P67936 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
TPM4P67936 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
TPM4P67936 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.68
TPM4P67936 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
TPM4P67936 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC19.33■□□□□ 0.68
TPM4P67936 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
TPM4P67936 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
TPM4P67936 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
TPM4P67936 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC19.33■□□□□ 0.68
TPM4P67936 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
TPM4P67936 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
TPM4P67936 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
TPM4P67936 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
TPM4P67936 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
TPM4P67936 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC19.32■□□□□ 0.68
TPM4P67936 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TPM4P67936 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TPM4P67936 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
TPM4P67936 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TPM4P67936 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC19.32■□□□□ 0.68
TPM4P67936 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TPM4P67936 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TPM4P67936 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TPM4P67936 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TPM4P67936 COX5BP2-201ENST00000392354 334 ntBASIC19.32■□□□□ 0.68
TPM4P67936 SNORA78-201ENST00000459373 127 ntBASIC19.32■□□□□ 0.68
TPM4P67936 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC19.32■□□□□ 0.68
TPM4P67936 AC140113.3-201ENST00000605663 199 ntBASIC19.32■□□□□ 0.68
TPM4P67936 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC19.32■□□□□ 0.68
TPM4P67936 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TPM4P67936 CES3-203ENST00000543856 3178 ntTSL 2 BASIC19.32■□□□□ 0.68
TPM4P67936 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
TPM4P67936 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
TPM4P67936 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TPM4P67936 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TPM4P67936 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TPM4P67936 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TPM4P67936 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
TPM4P67936 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
TPM4P67936 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TPM4P67936 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC19.32■□□□□ 0.68
TPM4P67936 AC078925.2-201ENST00000624013 1973 ntBASIC19.32■□□□□ 0.68
TPM4P67936 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TPM4P67936 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TPM4P67936 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
TPM4P67936 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
TPM4P67936 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
TPM4P67936 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms