Protein–RNA interactions for Protein: P58304

VSX2, Visual system homeobox 2, humanhuman

Predicted RBP Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX2P58304 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
VSX2P58304 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC16.5■□□□□ 0.23
VSX2P58304 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
VSX2P58304 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VSX2P58304 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC16.5■□□□□ 0.23
VSX2P58304 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
VSX2P58304 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VSX2P58304 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC16.5■□□□□ 0.23
VSX2P58304 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
VSX2P58304 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
VSX2P58304 LINC00896-202ENST00000609602 2128 ntBASIC16.49■□□□□ 0.23
VSX2P58304 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VSX2P58304 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
VSX2P58304 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VSX2P58304 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VSX2P58304 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
VSX2P58304 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC16.49■□□□□ 0.23
VSX2P58304 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC16.49■□□□□ 0.23
VSX2P58304 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VSX2P58304 RNA5SP415-201ENST00000517246 115 ntBASIC16.49■□□□□ 0.23
VSX2P58304 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VSX2P58304 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VSX2P58304 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
VSX2P58304 ETFA-208ENST00000559602 792 ntTSL 3 BASIC16.49■□□□□ 0.23
VSX2P58304 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VSX2P58304 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VSX2P58304 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
VSX2P58304 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC16.49■□□□□ 0.23
VSX2P58304 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC16.49■□□□□ 0.23
VSX2P58304 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VSX2P58304 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC16.49■□□□□ 0.23
VSX2P58304 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
VSX2P58304 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC16.49■□□□□ 0.23
VSX2P58304 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
VSX2P58304 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VSX2P58304 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
VSX2P58304 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
VSX2P58304 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
VSX2P58304 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC16.48■□□□□ 0.23
VSX2P58304 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
VSX2P58304 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC16.48■□□□□ 0.23
VSX2P58304 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC16.48■□□□□ 0.23
VSX2P58304 AC104109.2-201ENST00000602919 1418 ntBASIC16.48■□□□□ 0.23
VSX2P58304 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC16.48■□□□□ 0.23
VSX2P58304 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC16.48■□□□□ 0.23
VSX2P58304 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
VSX2P58304 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC16.48■□□□□ 0.23
VSX2P58304 UNC93B6-202ENST00000528242 690 ntBASIC16.48■□□□□ 0.23
VSX2P58304 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VSX2P58304 RPL18-209ENST00000550645 463 ntTSL 5 BASIC16.48■□□□□ 0.23
VSX2P58304 RPL18-214ENST00000552588 559 ntTSL 3 BASIC16.48■□□□□ 0.23
VSX2P58304 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC16.48■□□□□ 0.23
VSX2P58304 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC16.48■□□□□ 0.23
VSX2P58304 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC16.48■□□□□ 0.23
VSX2P58304 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
VSX2P58304 PGM5P2-202ENST00000637225 1043 ntBASIC16.48■□□□□ 0.23
VSX2P58304 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
VSX2P58304 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VSX2P58304 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
VSX2P58304 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC16.48■□□□□ 0.23
VSX2P58304 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
VSX2P58304 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC16.48■□□□□ 0.23
VSX2P58304 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
VSX2P58304 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
VSX2P58304 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
VSX2P58304 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VSX2P58304 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VSX2P58304 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC16.48■□□□□ 0.23
VSX2P58304 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
VSX2P58304 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
VSX2P58304 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
VSX2P58304 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
VSX2P58304 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
VSX2P58304 TPR-209ENST00000613151 2478 ntTSL 5 BASIC16.47■□□□□ 0.23
VSX2P58304 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
VSX2P58304 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
VSX2P58304 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
VSX2P58304 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
VSX2P58304 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VSX2P58304 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
VSX2P58304 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC16.47■□□□□ 0.23
VSX2P58304 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
VSX2P58304 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
VSX2P58304 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
VSX2P58304 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VSX2P58304 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
VSX2P58304 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC16.47■□□□□ 0.23
VSX2P58304 CD63-204ENST00000546939 779 ntTSL 3 BASIC16.47■□□□□ 0.23
VSX2P58304 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC16.47■□□□□ 0.23
VSX2P58304 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC16.47■□□□□ 0.23
VSX2P58304 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC16.47■□□□□ 0.23
VSX2P58304 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC16.47■□□□□ 0.23
VSX2P58304 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
VSX2P58304 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VSX2P58304 GPR89P-201ENST00000407924 1495 ntBASIC16.47■□□□□ 0.23
VSX2P58304 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
VSX2P58304 BOC-212ENST00000485230 2173 ntTSL 2 BASIC16.47■□□□□ 0.23
VSX2P58304 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VSX2P58304 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
VSX2P58304 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 56.3 ms