Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 TPSP2-201ENST00000561760 610 ntBASIC16.67■□□□□ 0.26
FOXA1P55317 AC116407.4-201ENST00000623319 1061 ntBASIC16.67■□□□□ 0.26
FOXA1P55317 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
FOXA1P55317 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC16.67■□□□□ 0.26
FOXA1P55317 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC16.67■□□□□ 0.26
FOXA1P55317 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC16.67■□□□□ 0.26
FOXA1P55317 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC16.67■□□□□ 0.26
FOXA1P55317 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
FOXA1P55317 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
FOXA1P55317 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
FOXA1P55317 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
FOXA1P55317 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
FOXA1P55317 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
FOXA1P55317 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
FOXA1P55317 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
FOXA1P55317 INTS4P1-201ENST00000438455 1935 ntBASIC16.66■□□□□ 0.26
FOXA1P55317 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC16.66■□□□□ 0.26
FOXA1P55317 PKD1P1-201ENST00000458669 6805 ntBASIC16.66■□□□□ 0.26
FOXA1P55317 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
FOXA1P55317 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
FOXA1P55317 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
FOXA1P55317 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC16.66■□□□□ 0.26
FOXA1P55317 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC16.66■□□□□ 0.26
FOXA1P55317 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
FOXA1P55317 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
FOXA1P55317 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
FOXA1P55317 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
FOXA1P55317 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC16.66■□□□□ 0.26
FOXA1P55317 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
FOXA1P55317 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
FOXA1P55317 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
FOXA1P55317 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC16.66■□□□□ 0.26
FOXA1P55317 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
FOXA1P55317 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
FOXA1P55317 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
FOXA1P55317 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
FOXA1P55317 TSSC2-201ENST00000450217 709 ntBASIC16.66■□□□□ 0.26
FOXA1P55317 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
FOXA1P55317 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
FOXA1P55317 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC16.66■□□□□ 0.26
FOXA1P55317 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC16.66■□□□□ 0.26
FOXA1P55317 BNIP3P18-201ENST00000593976 575 ntBASIC16.66■□□□□ 0.26
FOXA1P55317 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
FOXA1P55317 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC16.66■□□□□ 0.26
FOXA1P55317 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
FOXA1P55317 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
FOXA1P55317 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC16.66■□□□□ 0.26
FOXA1P55317 GPR89P-201ENST00000407924 1495 ntBASIC16.66■□□□□ 0.26
FOXA1P55317 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC16.66■□□□□ 0.26
FOXA1P55317 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
FOXA1P55317 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
FOXA1P55317 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC16.65■□□□□ 0.26
FOXA1P55317 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC16.65■□□□□ 0.26
FOXA1P55317 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
FOXA1P55317 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
FOXA1P55317 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
FOXA1P55317 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC16.65■□□□□ 0.26
FOXA1P55317 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
FOXA1P55317 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
FOXA1P55317 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC16.65■□□□□ 0.26
FOXA1P55317 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
FOXA1P55317 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC16.65■□□□□ 0.26
FOXA1P55317 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC16.65■□□□□ 0.26
FOXA1P55317 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC16.65■□□□□ 0.26
FOXA1P55317 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC16.65■□□□□ 0.26
FOXA1P55317 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
FOXA1P55317 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
FOXA1P55317 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
FOXA1P55317 CTNS-203ENST00000399306 803 ntTSL 3 BASIC16.65■□□□□ 0.26
FOXA1P55317 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC16.65■□□□□ 0.26
FOXA1P55317 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC16.65■□□□□ 0.26
FOXA1P55317 CDV3-207ENST00000508481 661 ntTSL 3 BASIC16.65■□□□□ 0.26
FOXA1P55317 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC16.65■□□□□ 0.26
FOXA1P55317 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC16.65■□□□□ 0.26
FOXA1P55317 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC16.65■□□□□ 0.26
FOXA1P55317 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC16.65■□□□□ 0.26
FOXA1P55317 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC16.65■□□□□ 0.26
FOXA1P55317 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
FOXA1P55317 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
FOXA1P55317 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC16.65■□□□□ 0.26
FOXA1P55317 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
FOXA1P55317 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
FOXA1P55317 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
FOXA1P55317 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
FOXA1P55317 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
FOXA1P55317 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC16.65■□□□□ 0.26
FOXA1P55317 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
FOXA1P55317 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC16.65■□□□□ 0.26
FOXA1P55317 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
FOXA1P55317 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
FOXA1P55317 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
FOXA1P55317 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
FOXA1P55317 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC16.65■□□□□ 0.26
FOXA1P55317 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC16.65■□□□□ 0.26
FOXA1P55317 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
FOXA1P55317 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
FOXA1P55317 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
FOXA1P55317 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
FOXA1P55317 AL645728.1-201ENST00000366221 2101 ntBASIC16.64■□□□□ 0.25
FOXA1P55317 PMPCAP1-201ENST00000508114 1576 ntBASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms