Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL4A5P29400 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC20.38■□□□□ 0.85
COL4A5P29400 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
COL4A5P29400 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL4A5P29400 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
COL4A5P29400 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
COL4A5P29400 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL4A5P29400 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
COL4A5P29400 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC20.38■□□□□ 0.85
COL4A5P29400 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC20.38■□□□□ 0.85
COL4A5P29400 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
COL4A5P29400 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC20.38■□□□□ 0.85
COL4A5P29400 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC20.38■□□□□ 0.85
COL4A5P29400 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC20.38■□□□□ 0.85
COL4A5P29400 RNA5-8SN1-201ENST00000610460 153 ntBASIC20.38■□□□□ 0.85
COL4A5P29400 RNA5-8SN5-202ENST00000612463 153 ntBASIC20.38■□□□□ 0.85
COL4A5P29400 RNA5-8SN4-201ENST00000613359 153 ntBASIC20.38■□□□□ 0.85
COL4A5P29400 RNA5-8SN5-201ENST00000619471 153 ntBASIC20.38■□□□□ 0.85
COL4A5P29400 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL4A5P29400 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC20.37■□□□□ 0.85
COL4A5P29400 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC20.37■□□□□ 0.85
COL4A5P29400 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
COL4A5P29400 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
COL4A5P29400 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
COL4A5P29400 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL4A5P29400 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL4A5P29400 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC20.37■□□□□ 0.85
COL4A5P29400 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL4A5P29400 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC20.37■□□□□ 0.85
COL4A5P29400 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL4A5P29400 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL4A5P29400 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL4A5P29400 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
COL4A5P29400 AL080243.2-201ENST00000418783 582 ntBASIC20.37■□□□□ 0.85
COL4A5P29400 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
COL4A5P29400 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC20.37■□□□□ 0.85
COL4A5P29400 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC20.37■□□□□ 0.85
COL4A5P29400 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC20.37■□□□□ 0.85
COL4A5P29400 LINC00896-202ENST00000609602 2128 ntBASIC20.37■□□□□ 0.85
COL4A5P29400 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC20.37■□□□□ 0.85
COL4A5P29400 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
COL4A5P29400 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL4A5P29400 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC20.37■□□□□ 0.85
COL4A5P29400 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL4A5P29400 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC20.37■□□□□ 0.85
COL4A5P29400 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC20.37■□□□□ 0.85
COL4A5P29400 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC20.37■□□□□ 0.85
COL4A5P29400 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL4A5P29400 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL4A5P29400 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
COL4A5P29400 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL4A5P29400 TOP3BP1-201ENST00000420768 1380 ntBASIC20.36■□□□□ 0.85
COL4A5P29400 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL4A5P29400 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
COL4A5P29400 AL138781.2-201ENST00000617896 1843 ntBASIC20.36■□□□□ 0.85
COL4A5P29400 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC20.36■□□□□ 0.85
COL4A5P29400 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL4A5P29400 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
COL4A5P29400 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC20.36■□□□□ 0.85
COL4A5P29400 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC20.36■□□□□ 0.85
COL4A5P29400 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC20.36■□□□□ 0.85
COL4A5P29400 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL4A5P29400 EGFEM1P-202ENST00000431685 1563 ntBASIC20.36■□□□□ 0.85
COL4A5P29400 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
COL4A5P29400 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL4A5P29400 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC20.36■□□□□ 0.85
COL4A5P29400 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL4A5P29400 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC20.36■□□□□ 0.85
COL4A5P29400 AC131009.4-201ENST00000624048 1740 ntBASIC20.36■□□□□ 0.85
COL4A5P29400 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC20.35■□□□□ 0.85
COL4A5P29400 MIR1909-201ENST00000411312 80 ntBASIC20.35■□□□□ 0.85
COL4A5P29400 PTPA-220ENST00000436883 532 ntTSL 4 BASIC20.35■□□□□ 0.85
COL4A5P29400 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC20.35■□□□□ 0.85
COL4A5P29400 GPR53P-205ENST00000457298 1084 ntBASIC20.35■□□□□ 0.85
COL4A5P29400 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC20.35■□□□□ 0.85
COL4A5P29400 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC20.35■□□□□ 0.85
COL4A5P29400 GIMAP3P-201ENST00000495150 836 ntBASIC20.35■□□□□ 0.85
COL4A5P29400 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC20.35■□□□□ 0.85
COL4A5P29400 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC20.35■□□□□ 0.85
COL4A5P29400 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC20.35■□□□□ 0.85
COL4A5P29400 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
COL4A5P29400 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC20.35■□□□□ 0.85
COL4A5P29400 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC20.35■□□□□ 0.85
COL4A5P29400 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL4A5P29400 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC20.35■□□□□ 0.85
COL4A5P29400 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL4A5P29400 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC20.35■□□□□ 0.85
COL4A5P29400 AC138969.3-201ENST00000546612 1459 ntBASIC20.35■□□□□ 0.85
COL4A5P29400 AC138932.2-201ENST00000548268 1459 ntBASIC20.35■□□□□ 0.85
COL4A5P29400 AC126755.4-201ENST00000549796 1459 ntBASIC20.35■□□□□ 0.85
COL4A5P29400 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL4A5P29400 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL4A5P29400 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL4A5P29400 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
COL4A5P29400 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
COL4A5P29400 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
COL4A5P29400 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC20.35■□□□□ 0.85
COL4A5P29400 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
COL4A5P29400 DGCR5-201ENST00000399539 862 ntBASIC20.35■□□□□ 0.85
COL4A5P29400 RPL37AP1-201ENST00000412502 279 ntBASIC20.35■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms