Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC17.21■□□□□ 0.35
XRCC1P18887 AL773604.1-201ENST00000617417 272 ntBASIC17.21■□□□□ 0.35
XRCC1P18887 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
XRCC1P18887 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC17.21■□□□□ 0.35
XRCC1P18887 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
XRCC1P18887 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC17.21■□□□□ 0.35
XRCC1P18887 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
XRCC1P18887 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC17.21■□□□□ 0.35
XRCC1P18887 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
XRCC1P18887 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
XRCC1P18887 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
XRCC1P18887 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
XRCC1P18887 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
XRCC1P18887 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
XRCC1P18887 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC17.21■□□□□ 0.34
XRCC1P18887 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.34
XRCC1P18887 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
XRCC1P18887 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC17.2■□□□□ 0.34
XRCC1P18887 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC17.2■□□□□ 0.34
XRCC1P18887 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
XRCC1P18887 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
XRCC1P18887 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
XRCC1P18887 AC106886.4-201ENST00000623557 2502 ntBASIC17.2■□□□□ 0.34
XRCC1P18887 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
XRCC1P18887 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
XRCC1P18887 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
XRCC1P18887 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
XRCC1P18887 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC17.2■□□□□ 0.34
XRCC1P18887 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
XRCC1P18887 AL356309.3-201ENST00000624132 1934 ntBASIC17.2■□□□□ 0.34
XRCC1P18887 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
XRCC1P18887 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
XRCC1P18887 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
XRCC1P18887 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
XRCC1P18887 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC17.2■□□□□ 0.34
XRCC1P18887 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
XRCC1P18887 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC17.2■□□□□ 0.34
XRCC1P18887 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC17.2■□□□□ 0.34
XRCC1P18887 PENK-208ENST00000523051 772 ntTSL 5 BASIC17.2■□□□□ 0.34
XRCC1P18887 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
XRCC1P18887 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC17.2■□□□□ 0.34
XRCC1P18887 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC17.2■□□□□ 0.34
XRCC1P18887 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
XRCC1P18887 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC17.2■□□□□ 0.34
XRCC1P18887 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
XRCC1P18887 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
XRCC1P18887 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
XRCC1P18887 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
XRCC1P18887 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
XRCC1P18887 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC17.2■□□□□ 0.34
XRCC1P18887 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC17.2■□□□□ 0.34
XRCC1P18887 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
XRCC1P18887 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
XRCC1P18887 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
XRCC1P18887 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
XRCC1P18887 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC17.19■□□□□ 0.34
XRCC1P18887 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
XRCC1P18887 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
XRCC1P18887 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
XRCC1P18887 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC17.19■□□□□ 0.34
XRCC1P18887 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
XRCC1P18887 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC17.19■□□□□ 0.34
XRCC1P18887 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC17.19■□□□□ 0.34
XRCC1P18887 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
XRCC1P18887 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC17.19■□□□□ 0.34
XRCC1P18887 TLE1-202ENST00000376484 666 ntTSL 3 BASIC17.19■□□□□ 0.34
XRCC1P18887 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
XRCC1P18887 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
XRCC1P18887 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
XRCC1P18887 AC073648.2-201ENST00000510116 352 ntBASIC17.19■□□□□ 0.34
XRCC1P18887 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC17.19■□□□□ 0.34
XRCC1P18887 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC17.19■□□□□ 0.34
XRCC1P18887 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC17.19■□□□□ 0.34
XRCC1P18887 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC17.19■□□□□ 0.34
XRCC1P18887 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC17.19■□□□□ 0.34
XRCC1P18887 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC17.19■□□□□ 0.34
XRCC1P18887 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
XRCC1P18887 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
XRCC1P18887 AL139288.1-201ENST00000623748 933 ntBASIC17.19■□□□□ 0.34
XRCC1P18887 BX276092.7-203ENST00000637198 1536 ntBASIC17.19■□□□□ 0.34
XRCC1P18887 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
XRCC1P18887 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
XRCC1P18887 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
XRCC1P18887 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
XRCC1P18887 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC17.19■□□□□ 0.34
XRCC1P18887 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC17.19■□□□□ 0.34
XRCC1P18887 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
XRCC1P18887 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
XRCC1P18887 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC17.19■□□□□ 0.34
XRCC1P18887 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC17.19■□□□□ 0.34
XRCC1P18887 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
XRCC1P18887 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
XRCC1P18887 AGGF1P2-201ENST00000426656 2106 ntBASIC17.18■□□□□ 0.34
XRCC1P18887 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
XRCC1P18887 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC17.18■□□□□ 0.34
XRCC1P18887 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
XRCC1P18887 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
XRCC1P18887 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
XRCC1P18887 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
XRCC1P18887 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms