Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC17.36■□□□□ 0.37
VIMP08670 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VIMP08670 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC17.36■□□□□ 0.37
VIMP08670 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VIMP08670 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VIMP08670 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC17.36■□□□□ 0.37
VIMP08670 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
VIMP08670 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC17.36■□□□□ 0.37
VIMP08670 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC17.36■□□□□ 0.37
VIMP08670 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC17.35■□□□□ 0.37
VIMP08670 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC17.35■□□□□ 0.37
VIMP08670 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VIMP08670 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
VIMP08670 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
VIMP08670 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VIMP08670 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VIMP08670 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VIMP08670 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
VIMP08670 AC097488.1-201ENST00000507834 756 ntBASIC17.35■□□□□ 0.37
VIMP08670 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC17.35■□□□□ 0.37
VIMP08670 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC17.35■□□□□ 0.37
VIMP08670 DGCR10-201ENST00000609839 495 ntBASIC17.35■□□□□ 0.37
VIMP08670 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC17.35■□□□□ 0.37
VIMP08670 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VIMP08670 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VIMP08670 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC17.35■□□□□ 0.37
VIMP08670 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
VIMP08670 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VIMP08670 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
VIMP08670 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
VIMP08670 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC17.35■□□□□ 0.37
VIMP08670 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VIMP08670 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VIMP08670 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
VIMP08670 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC17.35■□□□□ 0.37
VIMP08670 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
VIMP08670 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
VIMP08670 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VIMP08670 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
VIMP08670 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
VIMP08670 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
VIMP08670 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VIMP08670 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
VIMP08670 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
VIMP08670 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VIMP08670 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VIMP08670 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
VIMP08670 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VIMP08670 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VIMP08670 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
VIMP08670 KRT18P29-201ENST00000397031 1267 ntBASIC17.34■□□□□ 0.37
VIMP08670 GRAMD4P1-201ENST00000435181 1110 ntBASIC17.34■□□□□ 0.37
VIMP08670 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC17.34■□□□□ 0.37
VIMP08670 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC17.34■□□□□ 0.37
VIMP08670 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC17.34■□□□□ 0.37
VIMP08670 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC17.34■□□□□ 0.37
VIMP08670 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
VIMP08670 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
VIMP08670 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
VIMP08670 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
VIMP08670 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
VIMP08670 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC17.34■□□□□ 0.37
VIMP08670 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VIMP08670 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC17.34■□□□□ 0.37
VIMP08670 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
VIMP08670 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
VIMP08670 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
VIMP08670 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
VIMP08670 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
VIMP08670 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
VIMP08670 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC17.33■□□□□ 0.37
VIMP08670 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
VIMP08670 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
VIMP08670 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC17.33■□□□□ 0.37
VIMP08670 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VIMP08670 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
VIMP08670 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC17.33■□□□□ 0.36
VIMP08670 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
VIMP08670 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC17.33■□□□□ 0.36
VIMP08670 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC17.33■□□□□ 0.36
VIMP08670 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC17.33■□□□□ 0.36
VIMP08670 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
VIMP08670 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VIMP08670 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VIMP08670 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC17.33■□□□□ 0.36
VIMP08670 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
VIMP08670 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC17.33■□□□□ 0.36
VIMP08670 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC17.33■□□□□ 0.36
VIMP08670 IRX5-204ENST00000560154 879 ntTSL 5 BASIC17.33■□□□□ 0.36
VIMP08670 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC17.33■□□□□ 0.36
VIMP08670 ETFA-216ENST00000560726 942 ntTSL 3 BASIC17.33■□□□□ 0.36
VIMP08670 RN7SL471P-201ENST00000580476 299 ntBASIC17.33■□□□□ 0.36
VIMP08670 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
VIMP08670 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
VIMP08670 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VIMP08670 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
VIMP08670 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC17.33■□□□□ 0.36
VIMP08670 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VIMP08670 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC17.33■□□□□ 0.36
VIMP08670 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms