Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
HLA-DOAP06340 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC20.21■□□□□ 0.83
HLA-DOAP06340 AP000344.2-201ENST00000512987 629 ntBASIC20.21■□□□□ 0.83
HLA-DOAP06340 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
HLA-DOAP06340 REXO1L3P-201ENST00000622202 1288 ntBASIC20.21■□□□□ 0.83
HLA-DOAP06340 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC20.21■□□□□ 0.83
HLA-DOAP06340 GATB-213ENST00000515812 1893 ntTSL 5 BASIC20.21■□□□□ 0.83
HLA-DOAP06340 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
HLA-DOAP06340 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC20.21■□□□□ 0.83
HLA-DOAP06340 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HLA-DOAP06340 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
HLA-DOAP06340 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC20.21■□□□□ 0.83
HLA-DOAP06340 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC20.21■□□□□ 0.83
HLA-DOAP06340 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HLA-DOAP06340 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
HLA-DOAP06340 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC20.2■□□□□ 0.83
HLA-DOAP06340 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
HLA-DOAP06340 AC016396.2-201ENST00000562575 1417 ntBASIC20.2■□□□□ 0.82
HLA-DOAP06340 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
HLA-DOAP06340 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC20.2■□□□□ 0.82
HLA-DOAP06340 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
HLA-DOAP06340 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
HLA-DOAP06340 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
HLA-DOAP06340 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
HLA-DOAP06340 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
HLA-DOAP06340 AC002056.1-201ENST00000395613 760 ntBASIC20.2■□□□□ 0.82
HLA-DOAP06340 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC20.2■□□□□ 0.82
HLA-DOAP06340 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
HLA-DOAP06340 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
HLA-DOAP06340 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC20.2■□□□□ 0.82
HLA-DOAP06340 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC20.2■□□□□ 0.82
HLA-DOAP06340 RPS15-207ENST00000591032 550 ntTSL 3 BASIC20.2■□□□□ 0.82
HLA-DOAP06340 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC20.2■□□□□ 0.82
HLA-DOAP06340 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC20.2■□□□□ 0.82
HLA-DOAP06340 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HLA-DOAP06340 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
HLA-DOAP06340 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
HLA-DOAP06340 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC20.2■□□□□ 0.82
HLA-DOAP06340 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
HLA-DOAP06340 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HLA-DOAP06340 NEFHP1-201ENST00000412845 2629 ntBASIC20.2■□□□□ 0.82
HLA-DOAP06340 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC20.19■□□□□ 0.82
HLA-DOAP06340 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HLA-DOAP06340 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC20.19■□□□□ 0.82
HLA-DOAP06340 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
HLA-DOAP06340 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
HLA-DOAP06340 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HLA-DOAP06340 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
HLA-DOAP06340 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC20.19■□□□□ 0.82
HLA-DOAP06340 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
HLA-DOAP06340 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC20.19■□□□□ 0.82
HLA-DOAP06340 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC20.19■□□□□ 0.82
HLA-DOAP06340 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
HLA-DOAP06340 AC027796.2-201ENST00000575326 344 ntBASIC20.19■□□□□ 0.82
HLA-DOAP06340 EGFEM1P-202ENST00000431685 1563 ntBASIC20.19■□□□□ 0.82
HLA-DOAP06340 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HLA-DOAP06340 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HLA-DOAP06340 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC20.19■□□□□ 0.82
HLA-DOAP06340 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC20.19■□□□□ 0.82
HLA-DOAP06340 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC20.18■□□□□ 0.82
HLA-DOAP06340 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
HLA-DOAP06340 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
HLA-DOAP06340 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC20.18■□□□□ 0.82
HLA-DOAP06340 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC20.18■□□□□ 0.82
HLA-DOAP06340 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
HLA-DOAP06340 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC20.18■□□□□ 0.82
HLA-DOAP06340 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
HLA-DOAP06340 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
HLA-DOAP06340 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC20.18■□□□□ 0.82
HLA-DOAP06340 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC20.18■□□□□ 0.82
HLA-DOAP06340 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
HLA-DOAP06340 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
HLA-DOAP06340 AC005412.3-201ENST00000580309 715 ntBASIC20.18■□□□□ 0.82
HLA-DOAP06340 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC20.18■□□□□ 0.82
HLA-DOAP06340 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
HLA-DOAP06340 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
HLA-DOAP06340 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC20.18■□□□□ 0.82
HLA-DOAP06340 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
HLA-DOAP06340 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
HLA-DOAP06340 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
HLA-DOAP06340 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
HLA-DOAP06340 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
HLA-DOAP06340 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC20.18■□□□□ 0.82
HLA-DOAP06340 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HLA-DOAP06340 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
HLA-DOAP06340 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC20.17■□□□□ 0.82
HLA-DOAP06340 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HLA-DOAP06340 GNE-204ENST00000539208 2190 ntTSL 2 BASIC20.17■□□□□ 0.82
HLA-DOAP06340 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
HLA-DOAP06340 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
HLA-DOAP06340 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
HLA-DOAP06340 HARS-203ENST00000431330 1774 ntTSL 2 BASIC20.17■□□□□ 0.82
HLA-DOAP06340 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HLA-DOAP06340 STOM-202ENST00000347359 870 ntTSL 2 BASIC20.17■□□□□ 0.82
HLA-DOAP06340 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC20.17■□□□□ 0.82
HLA-DOAP06340 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC20.17■□□□□ 0.82
HLA-DOAP06340 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
HLA-DOAP06340 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC20.17■□□□□ 0.82
HLA-DOAP06340 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC20.17■□□□□ 0.82
HLA-DOAP06340 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC20.17■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms