Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC20.82■□□□□ 0.92
COL4A1P02462 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
COL4A1P02462 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC20.82■□□□□ 0.92
COL4A1P02462 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC20.82■□□□□ 0.92
COL4A1P02462 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
COL4A1P02462 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC20.82■□□□□ 0.92
COL4A1P02462 PP12613-201ENST00000424958 2230 ntBASIC20.82■□□□□ 0.92
COL4A1P02462 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL4A1P02462 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC20.81■□□□□ 0.92
COL4A1P02462 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL4A1P02462 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL4A1P02462 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC20.81■□□□□ 0.92
COL4A1P02462 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
COL4A1P02462 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL4A1P02462 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL4A1P02462 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC20.81■□□□□ 0.92
COL4A1P02462 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL4A1P02462 MIR4745-201ENST00000577608 62 ntBASIC20.81■□□□□ 0.92
COL4A1P02462 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL4A1P02462 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
COL4A1P02462 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
COL4A1P02462 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL4A1P02462 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL4A1P02462 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL4A1P02462 TUBB3P1-201ENST00000405796 1332 ntBASIC20.81■□□□□ 0.92
COL4A1P02462 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL4A1P02462 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC20.81■□□□□ 0.92
COL4A1P02462 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL4A1P02462 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL4A1P02462 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
COL4A1P02462 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
COL4A1P02462 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
COL4A1P02462 UXT-AS1-201ENST00000590504 1525 ntBASIC20.8■□□□□ 0.92
COL4A1P02462 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC20.8■□□□□ 0.92
COL4A1P02462 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL4A1P02462 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL4A1P02462 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL4A1P02462 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC20.8■□□□□ 0.92
COL4A1P02462 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC20.8■□□□□ 0.92
COL4A1P02462 AC055876.3-201ENST00000431496 288 ntBASIC20.8■□□□□ 0.92
COL4A1P02462 PNKD-204ENST00000436005 978 ntTSL 5 BASIC20.8■□□□□ 0.92
COL4A1P02462 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC20.8■□□□□ 0.92
COL4A1P02462 AC067863.1-201ENST00000494933 530 ntBASIC20.8■□□□□ 0.92
COL4A1P02462 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC20.8■□□□□ 0.92
COL4A1P02462 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC20.8■□□□□ 0.92
COL4A1P02462 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC20.8■□□□□ 0.92
COL4A1P02462 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC20.8■□□□□ 0.92
COL4A1P02462 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC20.8■□□□□ 0.92
COL4A1P02462 AC138649.4-201ENST00000612222 287 ntBASIC20.8■□□□□ 0.92
COL4A1P02462 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC20.8■□□□□ 0.92
COL4A1P02462 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC20.8■□□□□ 0.92
COL4A1P02462 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL4A1P02462 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC20.8■□□□□ 0.92
COL4A1P02462 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
COL4A1P02462 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
COL4A1P02462 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
COL4A1P02462 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
COL4A1P02462 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL4A1P02462 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC20.8■□□□□ 0.92
COL4A1P02462 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
COL4A1P02462 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC20.8■□□□□ 0.92
COL4A1P02462 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL4A1P02462 AL138688.1-201ENST00000624851 1594 ntBASIC20.8■□□□□ 0.92
COL4A1P02462 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL4A1P02462 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC20.8■□□□□ 0.92
COL4A1P02462 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
COL4A1P02462 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC20.8■□□□□ 0.92
COL4A1P02462 AC002472.2-201ENST00000442739 958 ntBASIC20.8■□□□□ 0.92
COL4A1P02462 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC20.8■□□□□ 0.92
COL4A1P02462 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
COL4A1P02462 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
COL4A1P02462 MIR4492-201ENST00000581627 80 ntBASIC20.8■□□□□ 0.92
COL4A1P02462 MIR6080-201ENST00000617359 66 ntBASIC20.8■□□□□ 0.92
COL4A1P02462 HFE2-206ENST00000634927 506 ntTSL 4 BASIC20.8■□□□□ 0.92
COL4A1P02462 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
COL4A1P02462 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
COL4A1P02462 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL4A1P02462 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL4A1P02462 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL4A1P02462 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
COL4A1P02462 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC20.79■□□□□ 0.92
COL4A1P02462 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC20.79■□□□□ 0.92
COL4A1P02462 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
COL4A1P02462 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
COL4A1P02462 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC20.79■□□□□ 0.92
COL4A1P02462 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL4A1P02462 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC20.79■□□□□ 0.92
COL4A1P02462 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
COL4A1P02462 AC131009.4-201ENST00000624048 1740 ntBASIC20.79■□□□□ 0.92
COL4A1P02462 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
COL4A1P02462 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
COL4A1P02462 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL4A1P02462 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC20.79■□□□□ 0.92
COL4A1P02462 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC20.79■□□□□ 0.92
COL4A1P02462 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC20.79■□□□□ 0.92
COL4A1P02462 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
COL4A1P02462 HCG4-201ENST00000418983 998 ntBASIC20.79■□□□□ 0.92
COL4A1P02462 AC142381.1-201ENST00000426099 345 ntBASIC20.79■□□□□ 0.92
COL4A1P02462 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC20.79■□□□□ 0.92
COL4A1P02462 AC091167.2-201ENST00000579581 588 ntBASIC20.79■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms