Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CACNA1FO60840 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CACNA1FO60840 SPDYE11-202ENST00000450699 704 ntBASIC21.43■■□□□ 1.02
CACNA1FO60840 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC21.43■■□□□ 1.02
CACNA1FO60840 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC21.43■■□□□ 1.02
CACNA1FO60840 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC21.43■■□□□ 1.02
CACNA1FO60840 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC21.43■■□□□ 1.02
CACNA1FO60840 SPDYE9P-201ENST00000570642 692 ntBASIC21.43■■□□□ 1.02
CACNA1FO60840 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC21.43■■□□□ 1.02
CACNA1FO60840 SPDYE10P-202ENST00000612005 668 ntBASIC21.43■■□□□ 1.02
CACNA1FO60840 SPDYE8P-202ENST00000612377 668 ntBASIC21.43■■□□□ 1.02
CACNA1FO60840 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC21.43■■□□□ 1.02
CACNA1FO60840 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CACNA1FO60840 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
CACNA1FO60840 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC21.43■■□□□ 1.02
CACNA1FO60840 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CACNA1FO60840 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC21.43■■□□□ 1.02
CACNA1FO60840 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
CACNA1FO60840 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CACNA1FO60840 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CACNA1FO60840 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CACNA1FO60840 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CACNA1FO60840 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC21.43■■□□□ 1.02
CACNA1FO60840 MIR940-201ENST00000401276 94 ntBASIC21.43■■□□□ 1.02
CACNA1FO60840 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC21.43■■□□□ 1.02
CACNA1FO60840 FAM185BP-201ENST00000443595 716 ntBASIC21.43■■□□□ 1.02
CACNA1FO60840 DNAJB3-202ENST00000449667 1266 ntBASIC21.43■■□□□ 1.02
CACNA1FO60840 AC112191.1-201ENST00000523689 701 ntBASIC21.43■■□□□ 1.02
CACNA1FO60840 CFL1-202ENST00000524553 860 ntTSL 2 BASIC21.43■■□□□ 1.02
CACNA1FO60840 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CACNA1FO60840 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CACNA1FO60840 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC21.43■■□□□ 1.02
CACNA1FO60840 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC21.43■■□□□ 1.02
CACNA1FO60840 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC21.42■■□□□ 1.02
CACNA1FO60840 SNX33P1-201ENST00000592116 1762 ntBASIC21.42■■□□□ 1.02
CACNA1FO60840 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC21.42■■□□□ 1.02
CACNA1FO60840 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CACNA1FO60840 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC21.42■■□□□ 1.02
CACNA1FO60840 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC21.42■■□□□ 1.02
CACNA1FO60840 AC211486.1-202ENST00000416371 468 ntBASIC21.42■■□□□ 1.02
CACNA1FO60840 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC21.42■■□□□ 1.02
CACNA1FO60840 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC21.42■■□□□ 1.02
CACNA1FO60840 AC211476.1-201ENST00000503899 468 ntBASIC21.42■■□□□ 1.02
CACNA1FO60840 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC21.42■■□□□ 1.02
CACNA1FO60840 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC21.42■■□□□ 1.02
CACNA1FO60840 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CACNA1FO60840 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CACNA1FO60840 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC21.42■■□□□ 1.02
CACNA1FO60840 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC21.42■■□□□ 1.02
CACNA1FO60840 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC21.42■■□□□ 1.02
CACNA1FO60840 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
CACNA1FO60840 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
CACNA1FO60840 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
CACNA1FO60840 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CACNA1FO60840 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
CACNA1FO60840 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC21.42■■□□□ 1.02
CACNA1FO60840 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
CACNA1FO60840 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
CACNA1FO60840 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC21.42■■□□□ 1.02
CACNA1FO60840 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
CACNA1FO60840 FIS1-203ENST00000442303 631 ntTSL 3 BASIC21.41■■□□□ 1.02
CACNA1FO60840 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
CACNA1FO60840 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC21.41■■□□□ 1.02
CACNA1FO60840 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
CACNA1FO60840 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC21.41■■□□□ 1.02
CACNA1FO60840 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
CACNA1FO60840 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
CACNA1FO60840 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC21.41■■□□□ 1.02
CACNA1FO60840 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC21.41■■□□□ 1.02
CACNA1FO60840 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CACNA1FO60840 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC21.41■■□□□ 1.02
CACNA1FO60840 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CACNA1FO60840 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CACNA1FO60840 AC005915.1-201ENST00000624912 2018 ntBASIC21.41■■□□□ 1.02
CACNA1FO60840 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
CACNA1FO60840 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
CACNA1FO60840 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
CACNA1FO60840 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
CACNA1FO60840 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC21.41■■□□□ 1.02
CACNA1FO60840 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC21.41■■□□□ 1.02
CACNA1FO60840 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC21.41■■□□□ 1.02
CACNA1FO60840 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC21.41■■□□□ 1.02
CACNA1FO60840 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC21.41■■□□□ 1.02
CACNA1FO60840 AC027612.4-201ENST00000605371 583 ntBASIC21.41■■□□□ 1.02
CACNA1FO60840 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC21.41■■□□□ 1.02
CACNA1FO60840 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC21.41■■□□□ 1.02
CACNA1FO60840 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
CACNA1FO60840 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CACNA1FO60840 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CACNA1FO60840 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CACNA1FO60840 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
CACNA1FO60840 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
CACNA1FO60840 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CACNA1FO60840 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CACNA1FO60840 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CACNA1FO60840 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC21.4■■□□□ 1.02
CACNA1FO60840 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC21.4■■□□□ 1.02
CACNA1FO60840 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
CACNA1FO60840 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CACNA1FO60840 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms