Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLDN3O15551 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
CLDN3O15551 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CLDN3O15551 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLDN3O15551 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC18.81■□□□□ 0.6
CLDN3O15551 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLDN3O15551 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLDN3O15551 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC18.81■□□□□ 0.6
CLDN3O15551 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC18.81■□□□□ 0.6
CLDN3O15551 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CLDN3O15551 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC18.81■□□□□ 0.6
CLDN3O15551 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC18.81■□□□□ 0.6
CLDN3O15551 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC18.81■□□□□ 0.6
CLDN3O15551 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CLDN3O15551 UNC93B6-202ENST00000528242 690 ntBASIC18.81■□□□□ 0.6
CLDN3O15551 SLC25A1P1-201ENST00000528351 927 ntBASIC18.81■□□□□ 0.6
CLDN3O15551 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLDN3O15551 RPL18-209ENST00000550645 463 ntTSL 5 BASIC18.81■□□□□ 0.6
CLDN3O15551 RPL18-214ENST00000552588 559 ntTSL 3 BASIC18.81■□□□□ 0.6
CLDN3O15551 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC18.81■□□□□ 0.6
CLDN3O15551 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC18.81■□□□□ 0.6
CLDN3O15551 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
CLDN3O15551 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC18.81■□□□□ 0.6
CLDN3O15551 AL805961.1-202ENST00000641562 540 ntBASIC18.81■□□□□ 0.6
CLDN3O15551 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC18.81■□□□□ 0.6
CLDN3O15551 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC18.81■□□□□ 0.6
CLDN3O15551 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
CLDN3O15551 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
CLDN3O15551 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CLDN3O15551 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CLDN3O15551 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLDN3O15551 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
CLDN3O15551 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
CLDN3O15551 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC18.81■□□□□ 0.6
CLDN3O15551 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC18.81■□□□□ 0.6
CLDN3O15551 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CLDN3O15551 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC18.81■□□□□ 0.6
CLDN3O15551 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC18.81■□□□□ 0.6
CLDN3O15551 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CLDN3O15551 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
CLDN3O15551 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLDN3O15551 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLDN3O15551 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CLDN3O15551 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CLDN3O15551 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC18.8■□□□□ 0.6
CLDN3O15551 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC18.8■□□□□ 0.6
CLDN3O15551 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC18.8■□□□□ 0.6
CLDN3O15551 AP002414.1-201ENST00000391405 1147 ntBASIC18.8■□□□□ 0.6
CLDN3O15551 SLC4A1APP2-201ENST00000424054 1259 ntBASIC18.8■□□□□ 0.6
CLDN3O15551 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLDN3O15551 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC18.8■□□□□ 0.6
CLDN3O15551 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC18.8■□□□□ 0.6
CLDN3O15551 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC18.8■□□□□ 0.6
CLDN3O15551 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLDN3O15551 AF228730.7-201ENST00000641842 219 ntBASIC18.8■□□□□ 0.6
CLDN3O15551 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLDN3O15551 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CLDN3O15551 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLDN3O15551 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC18.8■□□□□ 0.6
CLDN3O15551 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLDN3O15551 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLDN3O15551 AC093525.9-201ENST00000624961 1746 ntBASIC18.8■□□□□ 0.6
CLDN3O15551 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC18.8■□□□□ 0.6
CLDN3O15551 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC18.79■□□□□ 0.6
CLDN3O15551 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC18.79■□□□□ 0.6
CLDN3O15551 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CLDN3O15551 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
CLDN3O15551 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
CLDN3O15551 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC18.79■□□□□ 0.6
CLDN3O15551 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC18.79■□□□□ 0.6
CLDN3O15551 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLDN3O15551 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CLDN3O15551 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLDN3O15551 AC080080.1-201ENST00000625121 2420 ntBASIC18.79■□□□□ 0.6
CLDN3O15551 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC18.79■□□□□ 0.6
CLDN3O15551 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CLDN3O15551 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
CLDN3O15551 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
CLDN3O15551 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC18.79■□□□□ 0.6
CLDN3O15551 AC145285.3-201ENST00000564603 959 ntBASIC18.79■□□□□ 0.6
CLDN3O15551 AC106730.1-201ENST00000566722 1090 ntBASIC18.79■□□□□ 0.6
CLDN3O15551 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC18.79■□□□□ 0.6
CLDN3O15551 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLDN3O15551 AC008667.4-201ENST00000607370 168 ntBASIC18.79■□□□□ 0.6
CLDN3O15551 Z83851.2-201ENST00000609564 659 ntBASIC18.79■□□□□ 0.6
CLDN3O15551 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
CLDN3O15551 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CLDN3O15551 AC104109.2-201ENST00000602919 1418 ntBASIC18.79■□□□□ 0.6
CLDN3O15551 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC18.79■□□□□ 0.6
CLDN3O15551 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLDN3O15551 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC18.79■□□□□ 0.6
CLDN3O15551 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CLDN3O15551 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLDN3O15551 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
CLDN3O15551 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLDN3O15551 ZNF259P1-201ENST00000407656 1365 ntBASIC18.79■□□□□ 0.6
CLDN3O15551 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC18.79■□□□□ 0.6
CLDN3O15551 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
CLDN3O15551 AC116353.5-201ENST00000638148 1699 ntBASIC18.79■□□□□ 0.6
CLDN3O15551 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms