Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC25.32■■□□□ 1.64
PCDHA3Q9Y5H8 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
PCDHA3Q9Y5H8 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
PCDHA3Q9Y5H8 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC25.32■■□□□ 1.64
PCDHA3Q9Y5H8 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC25.31■■□□□ 1.64
PCDHA3Q9Y5H8 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
PCDHA3Q9Y5H8 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC25.31■■□□□ 1.64
PCDHA3Q9Y5H8 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
PCDHA3Q9Y5H8 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC25.31■■□□□ 1.64
PCDHA3Q9Y5H8 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC25.31■■□□□ 1.64
PCDHA3Q9Y5H8 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC25.31■■□□□ 1.64
PCDHA3Q9Y5H8 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
PCDHA3Q9Y5H8 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC25.31■■□□□ 1.64
PCDHA3Q9Y5H8 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC25.3■■□□□ 1.64
PCDHA3Q9Y5H8 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC25.3■■□□□ 1.64
PCDHA3Q9Y5H8 MIR3648-2-201ENST00000581792 180 ntBASIC25.3■■□□□ 1.64
PCDHA3Q9Y5H8 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC25.3■■□□□ 1.64
PCDHA3Q9Y5H8 MIR3648-1-201ENST00000615959 180 ntBASIC25.3■■□□□ 1.64
PCDHA3Q9Y5H8 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC25.3■■□□□ 1.64
PCDHA3Q9Y5H8 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
PCDHA3Q9Y5H8 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
PCDHA3Q9Y5H8 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
PCDHA3Q9Y5H8 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
PCDHA3Q9Y5H8 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC25.29■■□□□ 1.64
PCDHA3Q9Y5H8 GDI1-215ENST00000630693 786 ntTSL 4 BASIC25.29■■□□□ 1.64
PCDHA3Q9Y5H8 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
PCDHA3Q9Y5H8 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
PCDHA3Q9Y5H8 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC25.29■■□□□ 1.64
PCDHA3Q9Y5H8 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC25.29■■□□□ 1.64
PCDHA3Q9Y5H8 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
PCDHA3Q9Y5H8 AC142381.3-201ENST00000568208 1670 ntBASIC25.29■■□□□ 1.64
PCDHA3Q9Y5H8 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC25.29■■□□□ 1.64
PCDHA3Q9Y5H8 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC25.29■■□□□ 1.64
PCDHA3Q9Y5H8 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC25.28■■□□□ 1.64
PCDHA3Q9Y5H8 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
PCDHA3Q9Y5H8 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC25.28■■□□□ 1.64
PCDHA3Q9Y5H8 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC25.28■■□□□ 1.64
PCDHA3Q9Y5H8 MED17-227ENST00000640521 2047 ntTSL 5 BASIC25.27■■□□□ 1.64
PCDHA3Q9Y5H8 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC25.27■■□□□ 1.64
PCDHA3Q9Y5H8 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
PCDHA3Q9Y5H8 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
PCDHA3Q9Y5H8 MACF1-219ENST00000484793 834 ntTSL 2 BASIC25.26■■□□□ 1.63
PCDHA3Q9Y5H8 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
PCDHA3Q9Y5H8 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC25.26■■□□□ 1.63
PCDHA3Q9Y5H8 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC25.26■■□□□ 1.63
PCDHA3Q9Y5H8 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
PCDHA3Q9Y5H8 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
PCDHA3Q9Y5H8 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC25.26■■□□□ 1.63
PCDHA3Q9Y5H8 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
PCDHA3Q9Y5H8 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC25.25■■□□□ 1.63
PCDHA3Q9Y5H8 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
PCDHA3Q9Y5H8 AC126177.7-201ENST00000547904 679 ntBASIC25.25■■□□□ 1.63
PCDHA3Q9Y5H8 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC25.25■■□□□ 1.63
PCDHA3Q9Y5H8 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
PCDHA3Q9Y5H8 AC022211.4-201ENST00000625094 2161 ntBASIC25.25■■□□□ 1.63
PCDHA3Q9Y5H8 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC25.24■■□□□ 1.63
PCDHA3Q9Y5H8 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC25.24■■□□□ 1.63
PCDHA3Q9Y5H8 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC25.24■■□□□ 1.63
PCDHA3Q9Y5H8 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
PCDHA3Q9Y5H8 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
PCDHA3Q9Y5H8 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC25.23■■□□□ 1.63
PCDHA3Q9Y5H8 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
PCDHA3Q9Y5H8 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
PCDHA3Q9Y5H8 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
PCDHA3Q9Y5H8 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC25.23■■□□□ 1.63
PCDHA3Q9Y5H8 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
PCDHA3Q9Y5H8 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
PCDHA3Q9Y5H8 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
PCDHA3Q9Y5H8 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
PCDHA3Q9Y5H8 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
PCDHA3Q9Y5H8 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
PCDHA3Q9Y5H8 METRNL-202ENST00000570778 967 ntTSL 5 BASIC25.21■■□□□ 1.63
PCDHA3Q9Y5H8 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC25.21■■□□□ 1.63
PCDHA3Q9Y5H8 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC25.2■■□□□ 1.63
PCDHA3Q9Y5H8 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
PCDHA3Q9Y5H8 AC016575.1-201ENST00000607026 382 ntBASIC25.2■■□□□ 1.62
PCDHA3Q9Y5H8 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC25.2■■□□□ 1.62
PCDHA3Q9Y5H8 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
PCDHA3Q9Y5H8 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
PCDHA3Q9Y5H8 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC25.19■■□□□ 1.62
PCDHA3Q9Y5H8 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
PCDHA3Q9Y5H8 AC138932.3-201ENST00000567634 1902 ntBASIC25.19■■□□□ 1.62
PCDHA3Q9Y5H8 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC25.19■■□□□ 1.62
PCDHA3Q9Y5H8 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC25.18■■□□□ 1.62
PCDHA3Q9Y5H8 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC25.18■■□□□ 1.62
PCDHA3Q9Y5H8 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
PCDHA3Q9Y5H8 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC25.18■■□□□ 1.62
PCDHA3Q9Y5H8 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC25.18■■□□□ 1.62
PCDHA3Q9Y5H8 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
PCDHA3Q9Y5H8 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC25.17■■□□□ 1.62
PCDHA3Q9Y5H8 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC25.17■■□□□ 1.62
PCDHA3Q9Y5H8 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC25.17■■□□□ 1.62
PCDHA3Q9Y5H8 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC25.17■■□□□ 1.62
PCDHA3Q9Y5H8 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
PCDHA3Q9Y5H8 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
PCDHA3Q9Y5H8 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
PCDHA3Q9Y5H8 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
PCDHA3Q9Y5H8 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
PCDHA3Q9Y5H8 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC25.16■■□□□ 1.62
PCDHA3Q9Y5H8 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms