Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC27.26■■□□□ 1.95
UPF3AQ9H1J1 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC27.26■■□□□ 1.95
UPF3AQ9H1J1 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
UPF3AQ9H1J1 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC27.26■■□□□ 1.95
UPF3AQ9H1J1 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC27.26■■□□□ 1.95
UPF3AQ9H1J1 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC27.26■■□□□ 1.95
UPF3AQ9H1J1 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC27.26■■□□□ 1.95
UPF3AQ9H1J1 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC27.26■■□□□ 1.95
UPF3AQ9H1J1 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
UPF3AQ9H1J1 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
UPF3AQ9H1J1 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
UPF3AQ9H1J1 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
UPF3AQ9H1J1 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC27.25■■□□□ 1.95
UPF3AQ9H1J1 CREM-229ENST00000474362 1030 ntTSL 2 BASIC27.25■■□□□ 1.95
UPF3AQ9H1J1 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
UPF3AQ9H1J1 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
UPF3AQ9H1J1 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
UPF3AQ9H1J1 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
UPF3AQ9H1J1 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC27.23■■□□□ 1.95
UPF3AQ9H1J1 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
UPF3AQ9H1J1 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
UPF3AQ9H1J1 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
UPF3AQ9H1J1 KRT18P10-201ENST00000388836 1287 ntBASIC27.22■■□□□ 1.95
UPF3AQ9H1J1 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC27.22■■□□□ 1.95
UPF3AQ9H1J1 AC022616.5-201ENST00000518796 181 ntBASIC27.22■■□□□ 1.95
UPF3AQ9H1J1 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC27.21■■□□□ 1.95
UPF3AQ9H1J1 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC27.21■■□□□ 1.95
UPF3AQ9H1J1 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
UPF3AQ9H1J1 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC27.21■■□□□ 1.95
UPF3AQ9H1J1 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
UPF3AQ9H1J1 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
UPF3AQ9H1J1 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC27.21■■□□□ 1.95
UPF3AQ9H1J1 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
UPF3AQ9H1J1 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC27.2■■□□□ 1.94
UPF3AQ9H1J1 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
UPF3AQ9H1J1 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC27.2■■□□□ 1.94
UPF3AQ9H1J1 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC27.2■■□□□ 1.94
UPF3AQ9H1J1 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC27.2■■□□□ 1.94
UPF3AQ9H1J1 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
UPF3AQ9H1J1 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
UPF3AQ9H1J1 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC27.19■■□□□ 1.94
UPF3AQ9H1J1 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC27.19■■□□□ 1.94
UPF3AQ9H1J1 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC27.19■■□□□ 1.94
UPF3AQ9H1J1 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
UPF3AQ9H1J1 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC27.19■■□□□ 1.94
UPF3AQ9H1J1 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
UPF3AQ9H1J1 AL449106.1-201ENST00000608517 1980 ntBASIC27.18■■□□□ 1.94
UPF3AQ9H1J1 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
UPF3AQ9H1J1 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC27.18■■□□□ 1.94
UPF3AQ9H1J1 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC27.17■■□□□ 1.94
UPF3AQ9H1J1 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
UPF3AQ9H1J1 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC27.17■■□□□ 1.94
UPF3AQ9H1J1 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC27.17■■□□□ 1.94
UPF3AQ9H1J1 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC27.17■■□□□ 1.94
UPF3AQ9H1J1 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
UPF3AQ9H1J1 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC27.16■■□□□ 1.94
UPF3AQ9H1J1 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC27.16■■□□□ 1.94
UPF3AQ9H1J1 GRAMD4P7-201ENST00000578182 1232 ntBASIC27.16■■□□□ 1.94
UPF3AQ9H1J1 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
UPF3AQ9H1J1 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC27.16■■□□□ 1.94
UPF3AQ9H1J1 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
UPF3AQ9H1J1 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
UPF3AQ9H1J1 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
UPF3AQ9H1J1 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
UPF3AQ9H1J1 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC27.15■■□□□ 1.94
UPF3AQ9H1J1 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC27.15■■□□□ 1.94
UPF3AQ9H1J1 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC27.15■■□□□ 1.94
UPF3AQ9H1J1 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
UPF3AQ9H1J1 KRT125P-201ENST00000546827 989 ntBASIC27.14■■□□□ 1.94
UPF3AQ9H1J1 MIR4787-201ENST00000607364 84 ntBASIC27.14■■□□□ 1.94
UPF3AQ9H1J1 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC27.14■■□□□ 1.93
UPF3AQ9H1J1 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
UPF3AQ9H1J1 KRT18P24-201ENST00000344739 1156 ntBASIC27.13■■□□□ 1.93
UPF3AQ9H1J1 BX664725.1-201ENST00000438252 379 ntBASIC27.13■■□□□ 1.93
UPF3AQ9H1J1 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC27.13■■□□□ 1.93
UPF3AQ9H1J1 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
UPF3AQ9H1J1 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC27.12■■□□□ 1.93
UPF3AQ9H1J1 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC27.12■■□□□ 1.93
UPF3AQ9H1J1 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC27.12■■□□□ 1.93
UPF3AQ9H1J1 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
UPF3AQ9H1J1 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
UPF3AQ9H1J1 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC27.12■■□□□ 1.93
UPF3AQ9H1J1 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
UPF3AQ9H1J1 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
UPF3AQ9H1J1 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC27.11■■□□□ 1.93
UPF3AQ9H1J1 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC27.11■■□□□ 1.93
UPF3AQ9H1J1 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC27.11■■□□□ 1.93
UPF3AQ9H1J1 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
UPF3AQ9H1J1 LSM7-203ENST00000585409 512 ntTSL 2 BASIC27.11■■□□□ 1.93
UPF3AQ9H1J1 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC27.11■■□□□ 1.93
UPF3AQ9H1J1 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC27.11■■□□□ 1.93
UPF3AQ9H1J1 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
UPF3AQ9H1J1 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC27.11■■□□□ 1.93
UPF3AQ9H1J1 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC27.11■■□□□ 1.93
UPF3AQ9H1J1 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
UPF3AQ9H1J1 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC27.1■■□□□ 1.93
UPF3AQ9H1J1 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC27.1■■□□□ 1.93
UPF3AQ9H1J1 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC27.1■■□□□ 1.93
UPF3AQ9H1J1 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC27.1■■□□□ 1.93
UPF3AQ9H1J1 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC27.09■■□□□ 1.93
Retrieved 100 of 98,524 protein–RNA pairs in 56 ms