Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CDX1P47902 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CDX1P47902 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
CDX1P47902 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CDX1P47902 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CDX1P47902 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC19.5■□□□□ 0.71
CDX1P47902 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC19.5■□□□□ 0.71
CDX1P47902 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CDX1P47902 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC19.5■□□□□ 0.71
CDX1P47902 RNF126P1-201ENST00000567452 1320 ntBASIC19.5■□□□□ 0.71
CDX1P47902 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CDX1P47902 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CDX1P47902 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CDX1P47902 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CDX1P47902 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CDX1P47902 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CDX1P47902 AC126177.7-201ENST00000547904 679 ntBASIC19.49■□□□□ 0.71
CDX1P47902 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CDX1P47902 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
CDX1P47902 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CDX1P47902 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
CDX1P47902 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CDX1P47902 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
CDX1P47902 AC079834.2-201ENST00000609776 1949 ntBASIC19.48■□□□□ 0.71
CDX1P47902 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CDX1P47902 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC19.48■□□□□ 0.71
CDX1P47902 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CDX1P47902 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CDX1P47902 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CDX1P47902 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CDX1P47902 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC19.47■□□□□ 0.71
CDX1P47902 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC19.47■□□□□ 0.71
CDX1P47902 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
CDX1P47902 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CDX1P47902 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CDX1P47902 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CDX1P47902 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
CDX1P47902 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CDX1P47902 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC19.46■□□□□ 0.71
CDX1P47902 RARRES2P2-201ENST00000394842 485 ntBASIC19.46■□□□□ 0.71
CDX1P47902 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CDX1P47902 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC19.46■□□□□ 0.71
CDX1P47902 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
CDX1P47902 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CDX1P47902 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CDX1P47902 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CDX1P47902 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CDX1P47902 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CDX1P47902 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CDX1P47902 AC060814.1-201ENST00000554326 538 ntBASIC19.45■□□□□ 0.7
CDX1P47902 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC19.45■□□□□ 0.7
CDX1P47902 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
CDX1P47902 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
CDX1P47902 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CDX1P47902 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
CDX1P47902 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CDX1P47902 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CDX1P47902 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CDX1P47902 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC19.44■□□□□ 0.7
CDX1P47902 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
CDX1P47902 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CDX1P47902 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
CDX1P47902 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC19.44■□□□□ 0.7
CDX1P47902 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC19.44■□□□□ 0.7
CDX1P47902 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CDX1P47902 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDX1P47902 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC19.43■□□□□ 0.7
CDX1P47902 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDX1P47902 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
CDX1P47902 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
CDX1P47902 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CDX1P47902 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CDX1P47902 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CDX1P47902 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CDX1P47902 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CDX1P47902 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CDX1P47902 PROC-203ENST00000409048 1586 ntTSL 5 BASIC19.41■□□□□ 0.7
CDX1P47902 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC19.41■□□□□ 0.7
CDX1P47902 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CDX1P47902 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CDX1P47902 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CDX1P47902 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC19.4■□□□□ 0.7
CDX1P47902 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CDX1P47902 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CDX1P47902 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CDX1P47902 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CDX1P47902 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
CDX1P47902 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
CDX1P47902 AC145676.1-201ENST00000514988 2004 ntBASIC19.39■□□□□ 0.69
CDX1P47902 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CDX1P47902 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
CDX1P47902 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CDX1P47902 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CDX1P47902 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CDX1P47902 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CDX1P47902 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
CDX1P47902 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CDX1P47902 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CDX1P47902 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CDX1P47902 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms