Protein–RNA interactions for Protein: P40318

SSM4, ERAD-associated E3 ubiquitin-protein ligase DOA10, yeastyeast

Predictions only

Length 1,319 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SSM4P40318 VPS61YDR136C 573 nt8.88□□□□□ -0.99
SSM4P40318 PKC1YBL105C 3456 nt8.88□□□□□ -0.99
SSM4P40318 GCV3YAL044C 513 nt8.87□□□□□ -0.99
SSM4P40318 YOR200WYOR200W 399 nt8.87□□□□□ -0.99
SSM4P40318 YNL040WYNL040W 1371 nt8.87□□□□□ -0.99
SSM4P40318 MNS1YJR131W 1650 nt8.86□□□□□ -0.99
SSM4P40318 MLS1YNL117W 1665 nt8.86□□□□□ -0.99
SSM4P40318 YMC1YPR058W 924 nt8.86□□□□□ -0.99
SSM4P40318 MDM31YHR194W 1740 nt8.85□□□□□ -0.99
SSM4P40318 CIR2YOR356W 1896 nt8.85□□□□□ -0.99
SSM4P40318 CTF8YHR191C 402 nt8.84□□□□□ -0.99
SSM4P40318 DAP1YPL170W 459 nt8.84□□□□□ -0.99
SSM4P40318 YIL108WYIL108W 2091 nt8.83□□□□□ -1
SSM4P40318 AIM33YML087C 939 nt8.83□□□□□ -1
SSM4P40318 YNL017CYNL017C 339 nt8.83□□□□□ -1
SSM4P40318 PUS7YOR243C 2031 nt8.83□□□□□ -1
SSM4P40318 SUR7YML052W 909 nt8.82□□□□□ -1
SSM4P40318 GUD1YDL238C 1470 nt8.82□□□□□ -1
SSM4P40318 TIF2YJL138C 1188 nt8.81□□□□□ -1
SSM4P40318 TIF1YKR059W 1188 nt8.81□□□□□ -1
SSM4P40318 YNL042W-BYNL042W-B 258 nt8.81□□□□□ -1
SSM4P40318 GEF1YJR040W 2340 nt8.81□□□□□ -1
SSM4P40318 ARP3YJR065C 1350 nt8.81□□□□□ -1
SSM4P40318 YDR034W-BYDR034W-B 156 nt8.8□□□□□ -1
SSM4P40318 NAS6YGR232W 687 nt8.8□□□□□ -1
SSM4P40318 PYC2YBR218C 3543 nt8.8□□□□□ -1
SSM4P40318 DTR1YBR180W 1719 nt8.8□□□□□ -1
SSM4P40318 YHR070C-AYHR070C-A 411 nt8.8□□□□□ -1
SSM4P40318 CIN4YMR138W 576 nt8.8□□□□□ -1
SSM4P40318 SKS1YPL026C 1509 nt8.79□□□□□ -1
SSM4P40318 COX20YDR231C 618 nt8.79□□□□□ -1
SSM4P40318 YGL235WYGL235W 537 nt8.79□□□□□ -1
SSM4P40318 WHI2YOR043W 1461 nt8.78□□□□□ -1
SSM4P40318 SIT4YDL047W 936 nt8.78□□□□□ -1
SSM4P40318 TIM22YDL217C 624 nt8.78□□□□□ -1
SSM4P40318 YDR278CYDR278C 318 nt8.78□□□□□ -1
SSM4P40318 tR(ACG)DtR(ACG)D 73 nt8.78□□□□□ -1
SSM4P40318 tR(ACG)EtR(ACG)E 73 nt8.78□□□□□ -1
SSM4P40318 tR(ACG)KtR(ACG)K 73 nt8.78□□□□□ -1
SSM4P40318 tR(ACG)LtR(ACG)L 73 nt8.78□□□□□ -1
SSM4P40318 tR(ACG)OtR(ACG)O 73 nt8.78□□□□□ -1
SSM4P40318 ENV7YPL236C 1095 nt8.78□□□□□ -1
SSM4P40318 ADE12YNL220W 1302 nt8.76□□□□□ -1.01
SSM4P40318 HDA1YNL021W 2121 nt8.76□□□□□ -1.01
SSM4P40318 YPR114WYPR114W 948 nt8.76□□□□□ -1.01
SSM4P40318 YDL144CYDL144C 1071 nt8.75□□□□□ -1.01
SSM4P40318 DFM1YDR411C 1026 nt8.75□□□□□ -1.01
SSM4P40318 LDS1YAL018C 978 nt8.75□□□□□ -1.01
SSM4P40318 YLR126CYLR126C 756 nt8.75□□□□□ -1.01
SSM4P40318 TSA1YML028W 591 nt8.75□□□□□ -1.01
SSM4P40318 PYK2YOR347C 1521 nt8.75□□□□□ -1.01
SSM4P40318 YEL068CYEL068C 333 nt8.74□□□□□ -1.01
SSM4P40318 MCM3YEL032W 2916 nt8.73□□□□□ -1.01
SSM4P40318 MEU1YLR017W 1014 nt8.73□□□□□ -1.01
SSM4P40318 PEX13YLR191W 1161 nt8.73□□□□□ -1.01
SSM4P40318 YML012C-AYML012C-A 378 nt8.73□□□□□ -1.01
SSM4P40318 YPR160C-AYPR160C-A 285 nt8.73□□□□□ -1.01
SSM4P40318 DMA1YHR115C 1251 nt8.72□□□□□ -1.01
SSM4P40318 HST3YOR025W 1344 nt8.71□□□□□ -1.01
SSM4P40318 YDL022C-AYDL022C-A 249 nt8.71□□□□□ -1.02
SSM4P40318 MOD5YOR274W 1287 nt8.71□□□□□ -1.02
SSM4P40318 TEP1YNL128W 1305 nt8.7□□□□□ -1.02
SSM4P40318 YML083CYML083C 1257 nt8.7□□□□□ -1.02
SSM4P40318 ICS3YJL077C 396 nt8.69□□□□□ -1.02
SSM4P40318 DUS4YLR405W 1104 nt8.69□□□□□ -1.02
SSM4P40318 ILV2YMR108W 2064 nt8.69□□□□□ -1.02
SSM4P40318 YLL067CYLL067C 3618 nt8.68□□□□□ -1.02
SSM4P40318 RAD24YER173W 1980 nt8.68□□□□□ -1.02
SSM4P40318 TPO3YPR156C 1869 nt8.68□□□□□ -1.02
SSM4P40318 COR1YBL045C 1374 nt8.68□□□□□ -1.02
SSM4P40318 PRS2YER099C 957 nt8.68□□□□□ -1.02
SSM4P40318 HAP3YBL021C 435 nt8.68□□□□□ -1.02
SSM4P40318 MRPS16YPL013C 366 nt8.68□□□□□ -1.02
SSM4P40318 PHO3YBR092C 1404 nt8.68□□□□□ -1.02
SSM4P40318 ATG4YNL223W 1485 nt8.68□□□□□ -1.02
SSM4P40318 EFM3YJR129C 1020 nt8.67□□□□□ -1.02
SSM4P40318 KKQ8YKL168C 2175 nt8.67□□□□□ -1.02
SSM4P40318 YJL045WYJL045W 1905 nt8.66□□□□□ -1.02
SSM4P40318 GPB2YAL056W 2643 nt8.65□□□□□ -1.02
SSM4P40318 SHP1YBL058W 1272 nt8.65□□□□□ -1.02
SSM4P40318 PET112YBL080C 1626 nt8.64□□□□□ -1.03
SSM4P40318 SPO7YAL009W 780 nt8.64□□□□□ -1.03
SSM4P40318 RSP5YER125W 2430 nt8.63□□□□□ -1.03
SSM4P40318 AFG1YEL052W 1530 nt8.62□□□□□ -1.03
SSM4P40318 CDC13YDL220C 2775 nt8.61□□□□□ -1.03
SSM4P40318 YDL129WYDL129W 876 nt8.61□□□□□ -1.03
SSM4P40318 RPT3YDR394W 1287 nt8.61□□□□□ -1.03
SSM4P40318 SEN34YAR008W 828 nt8.61□□□□□ -1.03
SSM4P40318 YHM2YMR241W 945 nt8.61□□□□□ -1.03
SSM4P40318 GPI11YDR302W 660 nt8.6□□□□□ -1.03
SSM4P40318 GLN1YPR035W 1113 nt8.6□□□□□ -1.03
SSM4P40318 HXT13YEL069C 1695 nt8.6□□□□□ -1.03
SSM4P40318 UGX2YDL169C 672 nt8.59□□□□□ -1.03
SSM4P40318 BCY1YIL033C 1251 nt8.59□□□□□ -1.03
SSM4P40318 ISN1YOR155C 1353 nt8.59□□□□□ -1.03
SSM4P40318 PXL1YKR090W 2121 nt8.59□□□□□ -1.04
SSM4P40318 NDE1YMR145C 1683 nt8.58□□□□□ -1.04
SSM4P40318 MRPS12YNR036C 462 nt8.58□□□□□ -1.04
SSM4P40318 UBC11YOR339C 471 nt8.58□□□□□ -1.04
SSM4P40318 GAL2YLR081W 1725 nt8.58□□□□□ -1.04
Retrieved 100 of 7,029 protein–RNA pairs in 17.7 ms