Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
CISHQ9NSE2 AC008735.5-201ENST00000623544 497 ntBASIC18.37■□□□□ 0.53
CISHQ9NSE2 FAM215A-202ENST00000632077 792 ntBASIC18.37■□□□□ 0.53
CISHQ9NSE2 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
CISHQ9NSE2 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
CISHQ9NSE2 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CISHQ9NSE2 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
CISHQ9NSE2 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CISHQ9NSE2 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC18.37■□□□□ 0.53
CISHQ9NSE2 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC18.37■□□□□ 0.53
CISHQ9NSE2 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC18.37■□□□□ 0.53
CISHQ9NSE2 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC18.37■□□□□ 0.53
CISHQ9NSE2 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CISHQ9NSE2 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
CISHQ9NSE2 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
CISHQ9NSE2 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CISHQ9NSE2 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CISHQ9NSE2 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC18.36■□□□□ 0.53
CISHQ9NSE2 RPS2P28-201ENST00000314255 741 ntBASIC18.36■□□□□ 0.53
CISHQ9NSE2 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
CISHQ9NSE2 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
CISHQ9NSE2 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC18.36■□□□□ 0.53
CISHQ9NSE2 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC18.36■□□□□ 0.53
CISHQ9NSE2 AL031284.1-201ENST00000419297 478 ntBASIC18.36■□□□□ 0.53
CISHQ9NSE2 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC18.36■□□□□ 0.53
CISHQ9NSE2 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CISHQ9NSE2 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC18.36■□□□□ 0.53
CISHQ9NSE2 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC18.36■□□□□ 0.53
CISHQ9NSE2 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CISHQ9NSE2 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC18.36■□□□□ 0.53
CISHQ9NSE2 RNA5SP419-201ENST00000515908 135 ntBASIC18.36■□□□□ 0.53
CISHQ9NSE2 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC18.36■□□□□ 0.53
CISHQ9NSE2 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
CISHQ9NSE2 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC18.36■□□□□ 0.53
CISHQ9NSE2 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC18.36■□□□□ 0.53
CISHQ9NSE2 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CISHQ9NSE2 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
CISHQ9NSE2 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
CISHQ9NSE2 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC18.36■□□□□ 0.53
CISHQ9NSE2 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CISHQ9NSE2 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CISHQ9NSE2 AC060834.1-201ENST00000443027 2032 ntBASIC18.35■□□□□ 0.53
CISHQ9NSE2 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CISHQ9NSE2 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CISHQ9NSE2 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CISHQ9NSE2 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CISHQ9NSE2 HNRNPRP1-201ENST00000453465 1695 ntBASIC18.35■□□□□ 0.53
CISHQ9NSE2 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CISHQ9NSE2 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CISHQ9NSE2 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
CISHQ9NSE2 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC18.35■□□□□ 0.53
CISHQ9NSE2 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC18.35■□□□□ 0.53
CISHQ9NSE2 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CISHQ9NSE2 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CISHQ9NSE2 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CISHQ9NSE2 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC18.35■□□□□ 0.53
CISHQ9NSE2 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CISHQ9NSE2 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC18.35■□□□□ 0.53
CISHQ9NSE2 AC073621.1-201ENST00000392730 636 ntBASIC18.35■□□□□ 0.53
CISHQ9NSE2 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC18.35■□□□□ 0.53
CISHQ9NSE2 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CISHQ9NSE2 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC18.35■□□□□ 0.53
CISHQ9NSE2 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC18.35■□□□□ 0.53
CISHQ9NSE2 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC18.35■□□□□ 0.53
CISHQ9NSE2 AL049840.3-201ENST00000602669 611 ntBASIC18.35■□□□□ 0.53
CISHQ9NSE2 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC18.35■□□□□ 0.53
CISHQ9NSE2 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC18.35■□□□□ 0.53
CISHQ9NSE2 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CISHQ9NSE2 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CISHQ9NSE2 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CISHQ9NSE2 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
CISHQ9NSE2 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CISHQ9NSE2 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CISHQ9NSE2 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
CISHQ9NSE2 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CISHQ9NSE2 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CISHQ9NSE2 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CISHQ9NSE2 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC18.35■□□□□ 0.53
CISHQ9NSE2 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC18.35■□□□□ 0.53
CISHQ9NSE2 STX3-203ENST00000529177 1571 ntTSL 2 BASIC18.34■□□□□ 0.53
CISHQ9NSE2 FRMD8P1-201ENST00000440433 1524 ntBASIC18.34■□□□□ 0.53
CISHQ9NSE2 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC18.34■□□□□ 0.53
CISHQ9NSE2 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CISHQ9NSE2 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
CISHQ9NSE2 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CISHQ9NSE2 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CISHQ9NSE2 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CISHQ9NSE2 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
CISHQ9NSE2 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CISHQ9NSE2 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CISHQ9NSE2 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
CISHQ9NSE2 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CISHQ9NSE2 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CISHQ9NSE2 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CISHQ9NSE2 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CISHQ9NSE2 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CISHQ9NSE2 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CISHQ9NSE2 AL662844.1-201ENST00000546340 181 ntBASIC18.34■□□□□ 0.53
CISHQ9NSE2 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC18.34■□□□□ 0.53
CISHQ9NSE2 AC105339.3-201ENST00000560043 636 ntBASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms