Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC17.77■□□□□ 0.44
CDX2Q99626 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC17.77■□□□□ 0.44
CDX2Q99626 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CDX2Q99626 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
CDX2Q99626 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CDX2Q99626 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC17.77■□□□□ 0.44
CDX2Q99626 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
CDX2Q99626 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC17.77■□□□□ 0.44
CDX2Q99626 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CDX2Q99626 HLA-H-201ENST00000383620 1096 ntBASIC17.77■□□□□ 0.44
CDX2Q99626 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CDX2Q99626 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CDX2Q99626 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC17.77■□□□□ 0.44
CDX2Q99626 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC17.77■□□□□ 0.44
CDX2Q99626 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC17.77■□□□□ 0.44
CDX2Q99626 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC17.77■□□□□ 0.44
CDX2Q99626 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC17.77■□□□□ 0.44
CDX2Q99626 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC17.77■□□□□ 0.44
CDX2Q99626 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC17.77■□□□□ 0.44
CDX2Q99626 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC17.77■□□□□ 0.44
CDX2Q99626 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC17.77■□□□□ 0.44
CDX2Q99626 AC123567.1-201ENST00000548294 1261 ntBASIC17.77■□□□□ 0.44
CDX2Q99626 FOS-206ENST00000555347 1280 ntTSL 2 BASIC17.77■□□□□ 0.44
CDX2Q99626 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC17.77■□□□□ 0.44
CDX2Q99626 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
CDX2Q99626 AC015936.2-201ENST00000593177 259 ntBASIC17.77■□□□□ 0.44
CDX2Q99626 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC17.77■□□□□ 0.44
CDX2Q99626 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CDX2Q99626 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC17.77■□□□□ 0.44
CDX2Q99626 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC17.77■□□□□ 0.43
CDX2Q99626 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CDX2Q99626 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CDX2Q99626 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CDX2Q99626 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CDX2Q99626 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CDX2Q99626 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CDX2Q99626 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC17.77■□□□□ 0.43
CDX2Q99626 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CDX2Q99626 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CDX2Q99626 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC17.76■□□□□ 0.43
CDX2Q99626 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC17.76■□□□□ 0.43
CDX2Q99626 AC093525.8-201ENST00000624099 1342 ntBASIC17.76■□□□□ 0.43
CDX2Q99626 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
CDX2Q99626 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
CDX2Q99626 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CDX2Q99626 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC17.76■□□□□ 0.43
CDX2Q99626 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC17.76■□□□□ 0.43
CDX2Q99626 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CDX2Q99626 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CDX2Q99626 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CDX2Q99626 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
CDX2Q99626 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CDX2Q99626 AL080243.2-201ENST00000418783 582 ntBASIC17.76■□□□□ 0.43
CDX2Q99626 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC17.76■□□□□ 0.43
CDX2Q99626 KRT43P-201ENST00000434019 910 ntBASIC17.76■□□□□ 0.43
CDX2Q99626 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CDX2Q99626 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CDX2Q99626 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC17.76■□□□□ 0.43
CDX2Q99626 AL079307.3-201ENST00000556114 283 ntBASIC17.76■□□□□ 0.43
CDX2Q99626 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC17.76■□□□□ 0.43
CDX2Q99626 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC17.76■□□□□ 0.43
CDX2Q99626 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC17.76■□□□□ 0.43
CDX2Q99626 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC17.76■□□□□ 0.43
CDX2Q99626 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
CDX2Q99626 AC073389.1-201ENST00000595595 795 ntBASIC17.76■□□□□ 0.43
CDX2Q99626 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
CDX2Q99626 AMT-250ENST00000637682 1823 ntTSL 5 BASIC17.76■□□□□ 0.43
CDX2Q99626 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CDX2Q99626 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC17.76■□□□□ 0.43
CDX2Q99626 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC17.76■□□□□ 0.43
CDX2Q99626 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CDX2Q99626 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CDX2Q99626 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC17.76■□□□□ 0.43
CDX2Q99626 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC17.76■□□□□ 0.43
CDX2Q99626 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CDX2Q99626 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CDX2Q99626 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC17.75■□□□□ 0.43
CDX2Q99626 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC17.75■□□□□ 0.43
CDX2Q99626 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
CDX2Q99626 HNRNPRP1-201ENST00000453465 1695 ntBASIC17.75■□□□□ 0.43
CDX2Q99626 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
CDX2Q99626 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
CDX2Q99626 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
CDX2Q99626 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CDX2Q99626 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CDX2Q99626 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC17.75■□□□□ 0.43
CDX2Q99626 CTBP2P5-201ENST00000454986 1264 ntBASIC17.75■□□□□ 0.43
CDX2Q99626 RN7SL618P-201ENST00000477850 296 ntBASIC17.75■□□□□ 0.43
CDX2Q99626 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC17.75■□□□□ 0.43
CDX2Q99626 RAB35-202ENST00000534951 939 ntTSL 2 BASIC17.75■□□□□ 0.43
CDX2Q99626 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CDX2Q99626 AC044860.1-202ENST00000559481 777 ntBASIC17.75■□□□□ 0.43
CDX2Q99626 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC17.75■□□□□ 0.43
CDX2Q99626 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC17.75■□□□□ 0.43
CDX2Q99626 BTNL10-201ENST00000595971 695 ntBASIC17.75■□□□□ 0.43
CDX2Q99626 WT1-AS_2.1-201ENST00000613208 137 ntBASIC17.75■□□□□ 0.43
CDX2Q99626 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC17.75■□□□□ 0.43
CDX2Q99626 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CDX2Q99626 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC17.75■□□□□ 0.43
CDX2Q99626 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC17.75■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms