Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 RNF151-202ENST00000569210 853 ntTSL 2 BASIC13.34□□□□□ -0.27
CCDC140Q96MF4 MTDHP4-201ENST00000600287 670 ntBASIC13.34□□□□□ -0.27
CCDC140Q96MF4 AC064862.7-201ENST00000604520 867 ntBASIC13.34□□□□□ -0.27
CCDC140Q96MF4 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC13.34□□□□□ -0.27
CCDC140Q96MF4 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
CCDC140Q96MF4 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
CCDC140Q96MF4 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC140Q96MF4 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC140Q96MF4 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
CCDC140Q96MF4 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
CCDC140Q96MF4 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
CCDC140Q96MF4 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC13.34□□□□□ -0.27
CCDC140Q96MF4 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
CCDC140Q96MF4 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC140Q96MF4 PCDHA12-202ENST00000613593 2588 ntBASIC13.34□□□□□ -0.27
CCDC140Q96MF4 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC140Q96MF4 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC13.34□□□□□ -0.27
CCDC140Q96MF4 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC140Q96MF4 AD000864.1-201ENST00000624076 2295 ntBASIC13.34□□□□□ -0.27
CCDC140Q96MF4 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC140Q96MF4 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC140Q96MF4 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC140Q96MF4 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC140Q96MF4 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC13.34□□□□□ -0.27
CCDC140Q96MF4 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
CCDC140Q96MF4 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC13.34□□□□□ -0.27
CCDC140Q96MF4 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC13.34□□□□□ -0.27
CCDC140Q96MF4 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC13.34□□□□□ -0.27
CCDC140Q96MF4 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
CCDC140Q96MF4 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC13.33□□□□□ -0.27
CCDC140Q96MF4 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
CCDC140Q96MF4 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
CCDC140Q96MF4 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.27
CCDC140Q96MF4 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
CCDC140Q96MF4 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CCDC140Q96MF4 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CCDC140Q96MF4 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC13.33□□□□□ -0.28
CCDC140Q96MF4 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
CCDC140Q96MF4 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CCDC140Q96MF4 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CCDC140Q96MF4 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC13.33□□□□□ -0.28
CCDC140Q96MF4 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
CCDC140Q96MF4 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CCDC140Q96MF4 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CCDC140Q96MF4 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CCDC140Q96MF4 HIST2H3DP1-201ENST00000401004 416 ntBASIC13.33□□□□□ -0.28
CCDC140Q96MF4 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CCDC140Q96MF4 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
CCDC140Q96MF4 EMBP1-201ENST00000458200 901 ntBASIC13.33□□□□□ -0.28
CCDC140Q96MF4 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
CCDC140Q96MF4 PAM16-208ENST00000573553 722 ntTSL 2 BASIC13.33□□□□□ -0.28
CCDC140Q96MF4 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
CCDC140Q96MF4 AC025062.2-201ENST00000605477 670 ntBASIC13.33□□□□□ -0.28
CCDC140Q96MF4 AL353135.1-201ENST00000606729 504 ntBASIC13.33□□□□□ -0.28
CCDC140Q96MF4 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
CCDC140Q96MF4 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC13.33□□□□□ -0.28
CCDC140Q96MF4 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
CCDC140Q96MF4 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
CCDC140Q96MF4 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CCDC140Q96MF4 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC13.33□□□□□ -0.28
CCDC140Q96MF4 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
CCDC140Q96MF4 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC13.33□□□□□ -0.28
CCDC140Q96MF4 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
CCDC140Q96MF4 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
CCDC140Q96MF4 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC13.33□□□□□ -0.28
CCDC140Q96MF4 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
CCDC140Q96MF4 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CCDC140Q96MF4 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC13.33□□□□□ -0.28
CCDC140Q96MF4 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC13.33□□□□□ -0.28
CCDC140Q96MF4 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC13.33□□□□□ -0.28
CCDC140Q96MF4 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CCDC140Q96MF4 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC13.33□□□□□ -0.28
CCDC140Q96MF4 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CCDC140Q96MF4 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
CCDC140Q96MF4 PRORSD1P-202ENST00000563365 2154 ntBASIC13.32□□□□□ -0.28
CCDC140Q96MF4 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC140Q96MF4 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC140Q96MF4 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC140Q96MF4 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC140Q96MF4 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC140Q96MF4 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC140Q96MF4 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC140Q96MF4 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC140Q96MF4 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC140Q96MF4 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC140Q96MF4 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC140Q96MF4 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC140Q96MF4 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC140Q96MF4 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC140Q96MF4 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
CCDC140Q96MF4 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
CCDC140Q96MF4 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC140Q96MF4 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC140Q96MF4 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC13.32□□□□□ -0.28
CCDC140Q96MF4 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC13.32□□□□□ -0.28
CCDC140Q96MF4 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC13.32□□□□□ -0.28
CCDC140Q96MF4 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
CCDC140Q96MF4 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC140Q96MF4 MSRA-206ENST00000521209 814 ntTSL 3 BASIC13.32□□□□□ -0.28
CCDC140Q96MF4 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC13.32□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms