Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
VMP1Q96GC9 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
VMP1Q96GC9 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VMP1Q96GC9 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC16.57■□□□□ 0.24
VMP1Q96GC9 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC16.57■□□□□ 0.24
VMP1Q96GC9 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC16.57■□□□□ 0.24
VMP1Q96GC9 AL513477.1-201ENST00000602865 2407 ntBASIC16.57■□□□□ 0.24
VMP1Q96GC9 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC16.57■□□□□ 0.24
VMP1Q96GC9 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC16.57■□□□□ 0.24
VMP1Q96GC9 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC16.57■□□□□ 0.24
VMP1Q96GC9 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
VMP1Q96GC9 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VMP1Q96GC9 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC16.57■□□□□ 0.24
VMP1Q96GC9 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
VMP1Q96GC9 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
VMP1Q96GC9 PKD1P5-201ENST00000532415 10291 ntBASIC16.57■□□□□ 0.24
VMP1Q96GC9 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VMP1Q96GC9 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
VMP1Q96GC9 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC16.57■□□□□ 0.24
VMP1Q96GC9 THAP5-204ENST00000438865 868 ntTSL 2 BASIC16.57■□□□□ 0.24
VMP1Q96GC9 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC16.57■□□□□ 0.24
VMP1Q96GC9 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC16.57■□□□□ 0.24
VMP1Q96GC9 COX5A-204ENST00000567270 579 ntTSL 3 BASIC16.57■□□□□ 0.24
VMP1Q96GC9 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
VMP1Q96GC9 IRF5-214ENST00000613821 595 ntTSL 5 BASIC16.57■□□□□ 0.24
VMP1Q96GC9 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC16.57■□□□□ 0.24
VMP1Q96GC9 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VMP1Q96GC9 AC008894.3-201ENST00000624324 3103 ntBASIC16.57■□□□□ 0.24
VMP1Q96GC9 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VMP1Q96GC9 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VMP1Q96GC9 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
VMP1Q96GC9 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
VMP1Q96GC9 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
VMP1Q96GC9 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
VMP1Q96GC9 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VMP1Q96GC9 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
VMP1Q96GC9 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VMP1Q96GC9 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VMP1Q96GC9 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
VMP1Q96GC9 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VMP1Q96GC9 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
VMP1Q96GC9 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VMP1Q96GC9 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
VMP1Q96GC9 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
VMP1Q96GC9 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC16.56■□□□□ 0.24
VMP1Q96GC9 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VMP1Q96GC9 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
VMP1Q96GC9 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VMP1Q96GC9 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC16.56■□□□□ 0.24
VMP1Q96GC9 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VMP1Q96GC9 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
VMP1Q96GC9 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VMP1Q96GC9 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC16.56■□□□□ 0.24
VMP1Q96GC9 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
VMP1Q96GC9 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC16.56■□□□□ 0.24
VMP1Q96GC9 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VMP1Q96GC9 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VMP1Q96GC9 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC16.56■□□□□ 0.24
VMP1Q96GC9 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
VMP1Q96GC9 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC16.56■□□□□ 0.24
VMP1Q96GC9 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
VMP1Q96GC9 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC16.56■□□□□ 0.24
VMP1Q96GC9 AC096633.1-201ENST00000422446 749 ntBASIC16.56■□□□□ 0.24
VMP1Q96GC9 TPM4P1-201ENST00000436100 807 ntBASIC16.56■□□□□ 0.24
VMP1Q96GC9 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC16.56■□□□□ 0.24
VMP1Q96GC9 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC16.56■□□□□ 0.24
VMP1Q96GC9 MIR5100-201ENST00000579544 119 ntBASIC16.56■□□□□ 0.24
VMP1Q96GC9 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC16.56■□□□□ 0.24
VMP1Q96GC9 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
VMP1Q96GC9 AC011467.2-201ENST00000598425 242 ntBASIC16.56■□□□□ 0.24
VMP1Q96GC9 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC16.56■□□□□ 0.24
VMP1Q96GC9 AL591684.3-201ENST00000605187 298 ntBASIC16.56■□□□□ 0.24
VMP1Q96GC9 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
VMP1Q96GC9 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VMP1Q96GC9 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
VMP1Q96GC9 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VMP1Q96GC9 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC16.56■□□□□ 0.24
VMP1Q96GC9 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VMP1Q96GC9 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
VMP1Q96GC9 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
VMP1Q96GC9 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
VMP1Q96GC9 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VMP1Q96GC9 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC16.56■□□□□ 0.24
VMP1Q96GC9 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC16.56■□□□□ 0.24
VMP1Q96GC9 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
VMP1Q96GC9 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VMP1Q96GC9 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VMP1Q96GC9 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC16.55■□□□□ 0.24
VMP1Q96GC9 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VMP1Q96GC9 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VMP1Q96GC9 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC16.55■□□□□ 0.24
VMP1Q96GC9 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VMP1Q96GC9 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VMP1Q96GC9 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC16.55■□□□□ 0.24
VMP1Q96GC9 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC16.55■□□□□ 0.24
VMP1Q96GC9 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC16.55■□□□□ 0.24
VMP1Q96GC9 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
VMP1Q96GC9 AC004870.1-201ENST00000315132 882 ntBASIC16.55■□□□□ 0.24
VMP1Q96GC9 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VMP1Q96GC9 RCN1P2-201ENST00000398357 915 ntBASIC16.55■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms