Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
VPS53Q5VIR6 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC20.83■□□□□ 0.93
VPS53Q5VIR6 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
VPS53Q5VIR6 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
VPS53Q5VIR6 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
VPS53Q5VIR6 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.93
VPS53Q5VIR6 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
VPS53Q5VIR6 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC20.83■□□□□ 0.93
VPS53Q5VIR6 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
VPS53Q5VIR6 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC20.83■□□□□ 0.93
VPS53Q5VIR6 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC20.83■□□□□ 0.93
VPS53Q5VIR6 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
VPS53Q5VIR6 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
VPS53Q5VIR6 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
VPS53Q5VIR6 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.93
VPS53Q5VIR6 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
VPS53Q5VIR6 MRPL3P1-201ENST00000400109 1033 ntBASIC20.83■□□□□ 0.93
VPS53Q5VIR6 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
VPS53Q5VIR6 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
VPS53Q5VIR6 HNRNPDP1-201ENST00000439535 754 ntBASIC20.83■□□□□ 0.93
VPS53Q5VIR6 FAAHP1-202ENST00000446499 1238 ntBASIC20.83■□□□□ 0.93
VPS53Q5VIR6 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC20.83■□□□□ 0.93
VPS53Q5VIR6 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC20.83■□□□□ 0.93
VPS53Q5VIR6 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
VPS53Q5VIR6 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC20.83■□□□□ 0.93
VPS53Q5VIR6 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
VPS53Q5VIR6 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC20.83■□□□□ 0.93
VPS53Q5VIR6 CALM3-211ENST00000598871 561 ntTSL 4 BASIC20.83■□□□□ 0.93
VPS53Q5VIR6 AL139288.1-201ENST00000623748 933 ntBASIC20.83■□□□□ 0.93
VPS53Q5VIR6 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
VPS53Q5VIR6 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
VPS53Q5VIR6 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
VPS53Q5VIR6 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.92
VPS53Q5VIR6 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
VPS53Q5VIR6 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
VPS53Q5VIR6 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC20.83■□□□□ 0.92
VPS53Q5VIR6 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
VPS53Q5VIR6 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC20.83■□□□□ 0.92
VPS53Q5VIR6 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
VPS53Q5VIR6 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
VPS53Q5VIR6 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC20.82■□□□□ 0.92
VPS53Q5VIR6 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS53Q5VIR6 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC20.82■□□□□ 0.92
VPS53Q5VIR6 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
VPS53Q5VIR6 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
VPS53Q5VIR6 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS53Q5VIR6 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC20.82■□□□□ 0.92
VPS53Q5VIR6 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC20.82■□□□□ 0.92
VPS53Q5VIR6 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
VPS53Q5VIR6 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS53Q5VIR6 SLC25A1P3-201ENST00000395415 828 ntBASIC20.82■□□□□ 0.92
VPS53Q5VIR6 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS53Q5VIR6 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS53Q5VIR6 FAM197Y8-203ENST00000450145 560 ntBASIC20.82■□□□□ 0.92
VPS53Q5VIR6 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC20.82■□□□□ 0.92
VPS53Q5VIR6 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
VPS53Q5VIR6 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
VPS53Q5VIR6 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC20.82■□□□□ 0.92
VPS53Q5VIR6 CYGB-205ENST00000590175 830 ntTSL 3 BASIC20.82■□□□□ 0.92
VPS53Q5VIR6 AC064862.7-201ENST00000604520 867 ntBASIC20.82■□□□□ 0.92
VPS53Q5VIR6 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
VPS53Q5VIR6 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
VPS53Q5VIR6 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
VPS53Q5VIR6 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
VPS53Q5VIR6 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
VPS53Q5VIR6 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
VPS53Q5VIR6 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS53Q5VIR6 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC20.82■□□□□ 0.92
VPS53Q5VIR6 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS53Q5VIR6 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
VPS53Q5VIR6 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
VPS53Q5VIR6 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS53Q5VIR6 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
VPS53Q5VIR6 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS53Q5VIR6 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
VPS53Q5VIR6 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC20.81■□□□□ 0.92
VPS53Q5VIR6 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS53Q5VIR6 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS53Q5VIR6 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
VPS53Q5VIR6 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
VPS53Q5VIR6 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
VPS53Q5VIR6 ENSA-206ENST00000361631 725 ntTSL 2 BASIC20.81■□□□□ 0.92
VPS53Q5VIR6 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC20.81■□□□□ 0.92
VPS53Q5VIR6 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
VPS53Q5VIR6 TPM4P1-201ENST00000436100 807 ntBASIC20.81■□□□□ 0.92
VPS53Q5VIR6 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC20.81■□□□□ 0.92
VPS53Q5VIR6 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC20.81■□□□□ 0.92
VPS53Q5VIR6 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC20.81■□□□□ 0.92
VPS53Q5VIR6 AL160237.2-201ENST00000556165 472 ntBASIC20.81■□□□□ 0.92
VPS53Q5VIR6 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC20.81■□□□□ 0.92
VPS53Q5VIR6 MTDHP4-201ENST00000600287 670 ntBASIC20.81■□□□□ 0.92
VPS53Q5VIR6 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
VPS53Q5VIR6 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC20.81■□□□□ 0.92
VPS53Q5VIR6 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS53Q5VIR6 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS53Q5VIR6 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
VPS53Q5VIR6 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC20.8■□□□□ 0.92
VPS53Q5VIR6 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VPS53Q5VIR6 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
VPS53Q5VIR6 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms