Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
RC3H1Q5TC82 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC21.47■■□□□ 1.03
RC3H1Q5TC82 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
RC3H1Q5TC82 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
RC3H1Q5TC82 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
RC3H1Q5TC82 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC21.47■■□□□ 1.03
RC3H1Q5TC82 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
RC3H1Q5TC82 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC21.47■■□□□ 1.03
RC3H1Q5TC82 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC21.47■■□□□ 1.03
RC3H1Q5TC82 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC21.47■■□□□ 1.03
RC3H1Q5TC82 AC073389.1-201ENST00000595595 795 ntBASIC21.47■■□□□ 1.03
RC3H1Q5TC82 SRP9-204ENST00000619790 377 ntTSL 2 BASIC21.47■■□□□ 1.03
RC3H1Q5TC82 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC21.47■■□□□ 1.03
RC3H1Q5TC82 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
RC3H1Q5TC82 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
RC3H1Q5TC82 AC022144.1-201ENST00000602255 1580 ntBASIC21.47■■□□□ 1.03
RC3H1Q5TC82 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
RC3H1Q5TC82 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
RC3H1Q5TC82 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
RC3H1Q5TC82 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
RC3H1Q5TC82 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
RC3H1Q5TC82 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
RC3H1Q5TC82 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
RC3H1Q5TC82 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
RC3H1Q5TC82 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
RC3H1Q5TC82 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
RC3H1Q5TC82 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC21.46■■□□□ 1.03
RC3H1Q5TC82 SPTLC1P1-201ENST00000447199 261 ntBASIC21.46■■□□□ 1.03
RC3H1Q5TC82 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC21.46■■□□□ 1.03
RC3H1Q5TC82 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC21.46■■□□□ 1.03
RC3H1Q5TC82 RARRES2P9-201ENST00000565168 469 ntBASIC21.46■■□□□ 1.03
RC3H1Q5TC82 AL008721.1-201ENST00000609964 604 ntBASIC21.46■■□□□ 1.03
RC3H1Q5TC82 AC007967.4-201ENST00000614700 386 ntBASIC21.46■■□□□ 1.03
RC3H1Q5TC82 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
RC3H1Q5TC82 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
RC3H1Q5TC82 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
RC3H1Q5TC82 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC21.46■■□□□ 1.03
RC3H1Q5TC82 GRAMD4P3-201ENST00000621665 1669 ntBASIC21.46■■□□□ 1.03
RC3H1Q5TC82 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
RC3H1Q5TC82 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
RC3H1Q5TC82 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC21.46■■□□□ 1.03
RC3H1Q5TC82 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC21.45■■□□□ 1.02
RC3H1Q5TC82 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC21.45■■□□□ 1.02
RC3H1Q5TC82 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
RC3H1Q5TC82 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
RC3H1Q5TC82 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
RC3H1Q5TC82 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC21.45■■□□□ 1.02
RC3H1Q5TC82 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
RC3H1Q5TC82 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
RC3H1Q5TC82 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC21.45■■□□□ 1.02
RC3H1Q5TC82 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC21.45■■□□□ 1.02
RC3H1Q5TC82 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC21.45■■□□□ 1.02
RC3H1Q5TC82 AL359881.2-201ENST00000602973 570 ntBASIC21.45■■□□□ 1.02
RC3H1Q5TC82 GPER1-207ENST00000619052 571 ntTSL 2 BASIC21.45■■□□□ 1.02
RC3H1Q5TC82 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
RC3H1Q5TC82 AP001350.2-201ENST00000625104 1094 ntBASIC21.45■■□□□ 1.02
RC3H1Q5TC82 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC21.45■■□□□ 1.02
RC3H1Q5TC82 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
RC3H1Q5TC82 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
RC3H1Q5TC82 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
RC3H1Q5TC82 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
RC3H1Q5TC82 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
RC3H1Q5TC82 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
RC3H1Q5TC82 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
RC3H1Q5TC82 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
RC3H1Q5TC82 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
RC3H1Q5TC82 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
RC3H1Q5TC82 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC21.44■■□□□ 1.02
RC3H1Q5TC82 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
RC3H1Q5TC82 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC21.44■■□□□ 1.02
RC3H1Q5TC82 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
RC3H1Q5TC82 AP3S2-216ENST00000617003 1561 ntBASIC21.44■■□□□ 1.02
RC3H1Q5TC82 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
RC3H1Q5TC82 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
RC3H1Q5TC82 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC21.44■■□□□ 1.02
RC3H1Q5TC82 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
RC3H1Q5TC82 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
RC3H1Q5TC82 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
RC3H1Q5TC82 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
RC3H1Q5TC82 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC21.44■■□□□ 1.02
RC3H1Q5TC82 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
RC3H1Q5TC82 RN7SL692P-201ENST00000464677 288 ntBASIC21.44■■□□□ 1.02
RC3H1Q5TC82 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
RC3H1Q5TC82 AC105233.2-201ENST00000523697 349 ntBASIC21.44■■□□□ 1.02
RC3H1Q5TC82 AF228730.5-201ENST00000530288 346 ntBASIC21.44■■□□□ 1.02
RC3H1Q5TC82 NOP2-220ENST00000545915 630 ntTSL 2 BASIC21.44■■□□□ 1.02
RC3H1Q5TC82 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC21.44■■□□□ 1.02
RC3H1Q5TC82 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
RC3H1Q5TC82 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
RC3H1Q5TC82 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
RC3H1Q5TC82 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
RC3H1Q5TC82 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
RC3H1Q5TC82 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC21.44■■□□□ 1.02
RC3H1Q5TC82 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
RC3H1Q5TC82 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC21.44■■□□□ 1.02
RC3H1Q5TC82 NARF-206ENST00000457415 1668 ntTSL 5 BASIC21.44■■□□□ 1.02
RC3H1Q5TC82 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC21.43■■□□□ 1.02
RC3H1Q5TC82 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
RC3H1Q5TC82 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
RC3H1Q5TC82 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms