Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC16.7■□□□□ 0.26
FOXA1P55317 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
FOXA1P55317 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC16.7■□□□□ 0.26
FOXA1P55317 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC16.7■□□□□ 0.26
FOXA1P55317 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
FOXA1P55317 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC16.7■□□□□ 0.26
FOXA1P55317 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC16.7■□□□□ 0.26
FOXA1P55317 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC16.7■□□□□ 0.26
FOXA1P55317 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC16.7■□□□□ 0.26
FOXA1P55317 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC16.7■□□□□ 0.26
FOXA1P55317 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
FOXA1P55317 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
FOXA1P55317 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
FOXA1P55317 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
FOXA1P55317 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC16.69■□□□□ 0.26
FOXA1P55317 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
FOXA1P55317 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC16.69■□□□□ 0.26
FOXA1P55317 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC16.69■□□□□ 0.26
FOXA1P55317 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC16.69■□□□□ 0.26
FOXA1P55317 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
FOXA1P55317 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC16.69■□□□□ 0.26
FOXA1P55317 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
FOXA1P55317 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
FOXA1P55317 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
FOXA1P55317 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC16.69■□□□□ 0.26
FOXA1P55317 AC233702.3-201ENST00000578656 1387 ntBASIC16.69■□□□□ 0.26
FOXA1P55317 PCDHB17P-201ENST00000539533 2393 ntBASIC16.69■□□□□ 0.26
FOXA1P55317 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
FOXA1P55317 KLF4P1-201ENST00000412782 1185 ntBASIC16.69■□□□□ 0.26
FOXA1P55317 KRT18P21-201ENST00000515767 1272 ntBASIC16.69■□□□□ 0.26
FOXA1P55317 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC16.69■□□□□ 0.26
FOXA1P55317 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
FOXA1P55317 AC073592.5-201ENST00000624854 528 ntBASIC16.69■□□□□ 0.26
FOXA1P55317 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
FOXA1P55317 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
FOXA1P55317 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
FOXA1P55317 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
FOXA1P55317 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
FOXA1P55317 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
FOXA1P55317 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
FOXA1P55317 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
FOXA1P55317 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
FOXA1P55317 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
FOXA1P55317 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
FOXA1P55317 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC16.68■□□□□ 0.26
FOXA1P55317 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
FOXA1P55317 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
FOXA1P55317 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC16.68■□□□□ 0.26
FOXA1P55317 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
FOXA1P55317 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
FOXA1P55317 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC16.68■□□□□ 0.26
FOXA1P55317 AL662844.4-201ENST00000606367 2838 ntBASIC16.68■□□□□ 0.26
FOXA1P55317 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
FOXA1P55317 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
FOXA1P55317 CCS-201ENST00000310190 942 ntTSL 5 BASIC16.68■□□□□ 0.26
FOXA1P55317 AC003669.1-201ENST00000334569 611 ntBASIC16.68■□□□□ 0.26
FOXA1P55317 PPIH-202ENST00000372549 327 ntTSL 3 BASIC16.68■□□□□ 0.26
FOXA1P55317 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
FOXA1P55317 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
FOXA1P55317 CD9-202ENST00000382515 1229 ntTSL 5 BASIC16.68■□□□□ 0.26
FOXA1P55317 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC16.68■□□□□ 0.26
FOXA1P55317 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
FOXA1P55317 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
FOXA1P55317 AP002383.4-201ENST00000442518 975 ntBASIC16.68■□□□□ 0.26
FOXA1P55317 NKTR-203ENST00000442970 646 ntTSL 2 BASIC16.68■□□□□ 0.26
FOXA1P55317 DANCR-204ENST00000444958 709 ntTSL 3 BASIC16.68■□□□□ 0.26
FOXA1P55317 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC16.68■□□□□ 0.26
FOXA1P55317 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC16.68■□□□□ 0.26
FOXA1P55317 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC16.68■□□□□ 0.26
FOXA1P55317 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
FOXA1P55317 HR-201ENST00000312841 5351 ntTSL 5 BASIC16.68■□□□□ 0.26
FOXA1P55317 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
FOXA1P55317 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC16.68■□□□□ 0.26
FOXA1P55317 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
FOXA1P55317 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
FOXA1P55317 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
FOXA1P55317 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC16.68■□□□□ 0.26
FOXA1P55317 KRT18P1-202ENST00000452408 1331 ntBASIC16.68■□□□□ 0.26
FOXA1P55317 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
FOXA1P55317 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
FOXA1P55317 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC16.67■□□□□ 0.26
FOXA1P55317 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
FOXA1P55317 DOC2GP-204ENST00000639052 2548 ntBASIC16.67■□□□□ 0.26
FOXA1P55317 AC148477.5-201ENST00000625164 1645 ntBASIC16.67■□□□□ 0.26
FOXA1P55317 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
FOXA1P55317 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
FOXA1P55317 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
FOXA1P55317 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
FOXA1P55317 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC16.67■□□□□ 0.26
FOXA1P55317 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC16.67■□□□□ 0.26
FOXA1P55317 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
FOXA1P55317 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
FOXA1P55317 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
FOXA1P55317 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC16.67■□□□□ 0.26
FOXA1P55317 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
FOXA1P55317 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
FOXA1P55317 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
FOXA1P55317 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC16.67■□□□□ 0.26
FOXA1P55317 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
FOXA1P55317 VENTXP7-201ENST00000475503 772 ntBASIC16.67■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 54.1 ms