Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
COL4A4P53420 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL4A4P53420 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC18.26■□□□□ 0.51
COL4A4P53420 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL4A4P53420 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL4A4P53420 MYCLP1-201ENST00000372451 1075 ntBASIC18.25■□□□□ 0.51
COL4A4P53420 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
COL4A4P53420 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
COL4A4P53420 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC18.25■□□□□ 0.51
COL4A4P53420 AC004890.2-204ENST00000481968 304 ntBASIC18.25■□□□□ 0.51
COL4A4P53420 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC18.25■□□□□ 0.51
COL4A4P53420 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC18.25■□□□□ 0.51
COL4A4P53420 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC18.25■□□□□ 0.51
COL4A4P53420 AL008721.1-201ENST00000609964 604 ntBASIC18.25■□□□□ 0.51
COL4A4P53420 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC18.25■□□□□ 0.51
COL4A4P53420 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC18.25■□□□□ 0.51
COL4A4P53420 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC18.25■□□□□ 0.51
COL4A4P53420 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC18.25■□□□□ 0.51
COL4A4P53420 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC18.25■□□□□ 0.51
COL4A4P53420 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC18.25■□□□□ 0.51
COL4A4P53420 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL4A4P53420 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC18.25■□□□□ 0.51
COL4A4P53420 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC18.25■□□□□ 0.51
COL4A4P53420 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
COL4A4P53420 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL4A4P53420 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL4A4P53420 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
COL4A4P53420 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL4A4P53420 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL4A4P53420 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL4A4P53420 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL4A4P53420 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL4A4P53420 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL4A4P53420 CALY-202ENST00000368555 783 ntTSL 2 BASIC18.25■□□□□ 0.51
COL4A4P53420 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC18.25■□□□□ 0.51
COL4A4P53420 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL4A4P53420 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
COL4A4P53420 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC18.25■□□□□ 0.51
COL4A4P53420 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
COL4A4P53420 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL4A4P53420 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC18.25■□□□□ 0.51
COL4A4P53420 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC18.25■□□□□ 0.51
COL4A4P53420 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
COL4A4P53420 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC18.25■□□□□ 0.51
COL4A4P53420 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC18.25■□□□□ 0.51
COL4A4P53420 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC18.25■□□□□ 0.51
COL4A4P53420 BOC-212ENST00000485230 2173 ntTSL 2 BASIC18.25■□□□□ 0.51
COL4A4P53420 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC18.25■□□□□ 0.51
COL4A4P53420 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC18.25■□□□□ 0.51
COL4A4P53420 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC18.25■□□□□ 0.51
COL4A4P53420 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC18.25■□□□□ 0.51
COL4A4P53420 AC007613.1-201ENST00000572811 2597 ntBASIC18.25■□□□□ 0.51
COL4A4P53420 MIR6752-201ENST00000618442 71 ntBASIC18.25■□□□□ 0.51
COL4A4P53420 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
COL4A4P53420 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC18.24■□□□□ 0.51
COL4A4P53420 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
COL4A4P53420 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL4A4P53420 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
COL4A4P53420 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL4A4P53420 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC18.24■□□□□ 0.51
COL4A4P53420 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL4A4P53420 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL4A4P53420 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC18.24■□□□□ 0.51
COL4A4P53420 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
COL4A4P53420 FAM185BP-201ENST00000443595 716 ntBASIC18.24■□□□□ 0.51
COL4A4P53420 CD7-202ENST00000578509 925 ntTSL 3 BASIC18.24■□□□□ 0.51
COL4A4P53420 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL4A4P53420 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
COL4A4P53420 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC18.23■□□□□ 0.51
COL4A4P53420 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL4A4P53420 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL4A4P53420 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC18.23■□□□□ 0.51
COL4A4P53420 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL4A4P53420 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC18.23■□□□□ 0.51
COL4A4P53420 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL4A4P53420 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL4A4P53420 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL4A4P53420 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC18.23■□□□□ 0.51
COL4A4P53420 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL4A4P53420 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
COL4A4P53420 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC18.23■□□□□ 0.51
COL4A4P53420 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC18.23■□□□□ 0.51
COL4A4P53420 SPDYE7P-202ENST00000420373 878 ntBASIC18.23■□□□□ 0.51
COL4A4P53420 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL4A4P53420 SPCS2P4-201ENST00000436160 681 ntBASIC18.23■□□□□ 0.51
COL4A4P53420 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL4A4P53420 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC18.23■□□□□ 0.51
COL4A4P53420 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL4A4P53420 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC18.23■□□□□ 0.51
COL4A4P53420 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC18.23■□□□□ 0.51
COL4A4P53420 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC18.23■□□□□ 0.51
COL4A4P53420 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC18.23■□□□□ 0.51
COL4A4P53420 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL4A4P53420 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL4A4P53420 AL139327.4-201ENST00000612362 153 ntBASIC18.23■□□□□ 0.51
COL4A4P53420 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC18.23■□□□□ 0.51
COL4A4P53420 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL4A4P53420 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
COL4A4P53420 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL4A4P53420 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC18.23■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms