Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 PENK-208ENST00000523051 772 ntTSL 5 BASIC17.81■□□□□ 0.44
NEK3P51956 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
NEK3P51956 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC17.81■□□□□ 0.44
NEK3P51956 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC17.81■□□□□ 0.44
NEK3P51956 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
NEK3P51956 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
NEK3P51956 AL773604.1-201ENST00000617417 272 ntBASIC17.81■□□□□ 0.44
NEK3P51956 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC17.81■□□□□ 0.44
NEK3P51956 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC17.81■□□□□ 0.44
NEK3P51956 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
NEK3P51956 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
NEK3P51956 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
NEK3P51956 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
NEK3P51956 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
NEK3P51956 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
NEK3P51956 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
NEK3P51956 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
NEK3P51956 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC17.8■□□□□ 0.44
NEK3P51956 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
NEK3P51956 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC17.8■□□□□ 0.44
NEK3P51956 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC17.8■□□□□ 0.44
NEK3P51956 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC17.8■□□□□ 0.44
NEK3P51956 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
NEK3P51956 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
NEK3P51956 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
NEK3P51956 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
NEK3P51956 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
NEK3P51956 MED22-202ENST00000371999 987 ntTSL 3 BASIC17.8■□□□□ 0.44
NEK3P51956 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
NEK3P51956 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC17.8■□□□□ 0.44
NEK3P51956 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
NEK3P51956 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC17.8■□□□□ 0.44
NEK3P51956 COX5A-202ENST00000562233 441 ntTSL 3 BASIC17.8■□□□□ 0.44
NEK3P51956 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
NEK3P51956 LINC01451-201ENST00000623792 534 ntBASIC17.8■□□□□ 0.44
NEK3P51956 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
NEK3P51956 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
NEK3P51956 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
NEK3P51956 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
NEK3P51956 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC17.8■□□□□ 0.44
NEK3P51956 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
NEK3P51956 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
NEK3P51956 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
NEK3P51956 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
NEK3P51956 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
NEK3P51956 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC17.79■□□□□ 0.44
NEK3P51956 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
NEK3P51956 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC17.79■□□□□ 0.44
NEK3P51956 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
NEK3P51956 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
NEK3P51956 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
NEK3P51956 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
NEK3P51956 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
NEK3P51956 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
NEK3P51956 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
NEK3P51956 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
NEK3P51956 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC17.79■□□□□ 0.44
NEK3P51956 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC17.79■□□□□ 0.44
NEK3P51956 COX5BP2-201ENST00000392354 334 ntBASIC17.79■□□□□ 0.44
NEK3P51956 PON3-205ENST00000451904 1053 ntTSL 3 BASIC17.79■□□□□ 0.44
NEK3P51956 AC079776.4-201ENST00000511039 504 ntBASIC17.79■□□□□ 0.44
NEK3P51956 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC17.79■□□□□ 0.44
NEK3P51956 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
NEK3P51956 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC17.79■□□□□ 0.44
NEK3P51956 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC17.79■□□□□ 0.44
NEK3P51956 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
NEK3P51956 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
NEK3P51956 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC17.79■□□□□ 0.44
NEK3P51956 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC17.79■□□□□ 0.44
NEK3P51956 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
NEK3P51956 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
NEK3P51956 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC17.79■□□□□ 0.44
NEK3P51956 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC17.79■□□□□ 0.44
NEK3P51956 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
NEK3P51956 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
NEK3P51956 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
NEK3P51956 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
NEK3P51956 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
NEK3P51956 CICP6-201ENST00000457191 2729 ntBASIC17.78■□□□□ 0.44
NEK3P51956 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
NEK3P51956 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
NEK3P51956 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
NEK3P51956 HLA-A-201ENST00000376802 1334 ntBASIC17.78■□□□□ 0.44
NEK3P51956 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC17.78■□□□□ 0.44
NEK3P51956 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
NEK3P51956 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
NEK3P51956 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC17.78■□□□□ 0.44
NEK3P51956 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
NEK3P51956 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC17.78■□□□□ 0.44
NEK3P51956 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC17.78■□□□□ 0.44
NEK3P51956 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
NEK3P51956 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
NEK3P51956 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC17.78■□□□□ 0.44
NEK3P51956 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC17.78■□□□□ 0.44
NEK3P51956 AC103564.2-201ENST00000432853 1299 ntBASIC17.78■□□□□ 0.44
NEK3P51956 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC17.78■□□□□ 0.44
NEK3P51956 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC17.78■□□□□ 0.44
NEK3P51956 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC17.78■□□□□ 0.44
NEK3P51956 AP001005.1-201ENST00000571755 1248 ntBASIC17.78■□□□□ 0.44
NEK3P51956 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms